Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2629 ATGGGGAAAACCGGGGCCAAGTTGCCAAGTTTCTGTCTGAACCGGATCCGGCCTCATGTTCGAGTTCCTATTCAATCCAAACCGGACTCTGTTTCTGTAAAAACCGGTCCTAACAAGAAGGCTGATGATTCCGTTGATGACATTCAAGTTGGAGCTAAGCCAGTTTTGGGAATTGGAAGGAAGATCATGATTGTGGTTGATTCCACCATTGAAGCTGAAGGAGCTCTTCATTGGGCTCTCTCTCACACTGTCCAAAATCAAGACAACATTCTTCTTCTTCATCTCACTAAGCCTTCAACAAAAGGAGAAGGACTGAGTAAGGAGACAGCACCAAGAGCTTACGAATTGGTTCATTCCATGAGAACTTTATGCCAATTGAAGAGACCTGAGGTGGAAACGGAAGTTGCGGTGGTGGAAGGAGGGAAGGAGAAAGGGGCAGTGATAGTGGAAGAAGCGAGAAAGCGAGGGGTGTCGTTGCTGGTTTTGGGGCAGAAGAAACGGTCGACGACATGGCGGCTTCTGATGGTGTGGGCAGGCCACCGGTGGGGCGGCGGAGGTGGCGGCGGTGGTGTGGTGGAGTATTGTATACAAAATGCGAGCTGTATGGCGATTGCGGTGAGAAGGAAGAGCAAGAAATTGGGTGGTTATTTGATCACTACAAAGCGTCAAAAGGATTTCTGGCTTTTGGCTTAA 693 48.92 MGKTGAKLPSFCLNRIRPHVRVPIQSKPDSVSVKTGPNKKADDSVDDIQVGAKPVLGIGRKIMIVVDSTIEAEGALHWALSHTVQNQDNILLLHLTKPSTKGEGLSKETAPRAYELVHSMRTLCQLKRPEVETEVAVVEGGKEKGAVIVEEARKRGVSLLVLGQKKRSTTWRLLMVWAGHRWGGGGGGGGVVEYCIQNASCMAIAVRRKSKKLGGYLITTKRQKDFWLLA 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34437282 34438167 - CcPI632755_05g026290.1 Cco05g2629 180257

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2629 230 Pfam Universal stress protein family 60 207 IPR006016 -
Cco05g2629 230 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 1 230 - -
Cco05g2629 230 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 60 210 - -
Cco05g2629 230 Gene3D HUPs 59 214 IPR014729 -
Cco05g2629 230 CDD USP_Like 61 206 - -
Cco05g2629 230 MobiDBLite consensus disorder prediction 25 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2629 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2629 Cco-Chr5:34437282 Cco11g1622 Cco-Chr11:29042893 1.30E-20 dispersed
Cco01g1748 Cco-Chr1:30234069 Cco05g2629 Cco-Chr5:34437282 7.20E-43 wgd
Cco05g2629 Cco-Chr5:34437282 Cco06g1743 Cco-Chr6:27914110 2.70E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g6 . . . . . . Bma14g01716 . Cmo04g01798 Cmo18g01118 . Cma18g01096 . Car18g01011 Sed07g2036 Cpe09g00230 . Bhi07g01468 Tan04g0973 Cmetu10g0107 Lac13g0388 Hepe10g1807 . . Cla05g02384 Cam05g2556 Cec05g2588 Cco05g2629 Clacu05g2557 Cmu05g2414 Cre05g2531 Cone13ag0894 . . Cone9ag0527 Lsi04g00353 Csa05g02523 Chy10g01067 Cme10g00347 . . . . . . . Bma06g00744 . . . Cma04g01711 . Car04g01745 . . . . . . . . . . . . . . . . . . . . .
Vvi1g174 . . . . . . . . . . . . Car04g01610 . Sed06g1836 . Cpe01g01385 Bhi07g01403 Tan04g0931 Cmetu05g1710 . . . . Cla05g02384 Cam05g2556 Cec05g2588 Cco05g2629 Clacu05g2557 Cmu05g2414 Cre05g2531 . . . . . . . . . . . . . . . . . . . . . . . . Cpe04g01421 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009362 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33