Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2631 ATGATGGGTCTGAAAAGTGGAGCTGAGGGTACGATGCTGAGTATGGTAACATTATTAGATTTGGTTTTACACTCTATTATTCCAACTTCCAACTTTCCAACACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAAAAACATTAATAATATAATGAGTAACTCCGAAGATAAATCTTCCATGGATTTGGTTCAACCTTCTGACCACCTCTGTTATGTCAAATGCAACTTCTGTAACACTCTCCTTGCGGTTGGGATTCCATGCAGACGTTTATTGGATACGGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCATTTTTAACCACAAGACCTCCTTTACAAGGCCAATGCATTGATCATCCTCTAAATTTTCAGTCTCAAGTTGGGTTCTCCAATGATATTCGAAAGGGTGCGTCCACGTCGTCCACTTCCACGTCCTCTTCAATGCCAAATGAGTCCCCTTCTCCAAATTTTGTTGTTAAACCCCCTGAGAAGAAACACAGACTTCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGCAGCAAAAAACTGGGCAAGGTACATCCCAAATTCAGCTGCTGGGTCGGTTTCTGGAACTCATCACAACAACGAATGA 711 41.07 MMGLKSGAEGTMLSMVTLLDLVLHSIIPTSNFPTPSSSSSSSSSSSSSSSSSSSSSKNINNIMSNSEDKSSMDLVQPSDHLCYVKCNFCNTLLAVGIPCRRLLDTVTVKCGHCSNLSFLTTRPPLQGQCIDHPLNFQSQVGFSNDIRKGASTSSTSTSSSMPNESPSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHHNNE 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34458203 34459839 - CcPI632755_05g026310.1 Cco05g2631 180259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2631 236 MobiDBLite consensus disorder prediction 32 71 - -
Cco05g2631 236 MobiDBLite consensus disorder prediction 145 167 - -
Cco05g2631 236 PANTHER PROTEIN YABBY 6-RELATED 77 232 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
Cco05g2631 236 MobiDBLite consensus disorder prediction 145 178 - -
Cco05g2631 236 Pfam YABBY protein 77 219 IPR006780 GO:0007275(InterPro)
Cco05g2631 236 FunFam protein CRABS CLAW isoform X3 171 230 - -
Cco05g2631 236 SUPERFAMILY HMG-box 165 217 IPR036910 -
Cco05g2631 236 CDD HMG-box_SF 180 216 - -
Cco05g2631 236 Gene3D High mobility group box domain 168 221 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2631 Cco-Chr5:34458203 Cco05g2647 Cco-Chr5:34584211 6.40E-111 dispersed
Cco05g2631 Cco-Chr5:34458203 Cco06g1303 Cco-Chr6:23255525 2.50E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59386 PF04690 YABBY 1.00E-53 CL0114 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2631 K25796 - csv:101219863 306.605