Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2637 ATGGGGGAAGCAAACGAAGGAGGAAGTAGAGGAATGGAGAAAGTTCCTCTACAAACTGAAAAATACCCAACAGATCTGTTGCAGAGATTTTTGTGTAGCAATTCACATCAGACCCAAATTCGGGCGTTTAATGAAGAAGAAGAAGAAGATGGAGAGGAGATTGAGCTTAATCTTGGGCTTTCACTAGGGGGTCGATTTGGGGTTGACAAAAATTCCAAGAAGCTTATTCGATCATCGTCCATAGCCGGTACCATGCTTTTGAGGGACGATGAGGCTTCTACTCCAGCAGCAGTATCGTACCCGGCGGCGCTTATTCGGACCTCGTCTCTTCCGCCGGAGACGGAGGAGGAGTGGAGGAAGAGGAAGGAATTGCAGACGTTGAGGCGAATGGAGGCGAAAAGGAGACGATTTGAGAAGCAGAGGAATAAGGATGGGATTGGGATGGGGACCGGCGGGTGTTTTGAAGAAGAGAGGCGTGAAATTGAAGGCCTTACAGGATTGAATTTGAGAGAGAAAAGGCCTGGTTTGGCTATTTCGACGGTGGCACCGCCATTCGGGTTGCCGACGTGGGCTGCAGCTGCTCGACAGGCTCTTACTGGCGGAATTGTGGATGAGGTTGGCAAAGGCAAAGGTGGCTGTGCATCAGGTGGAGGCGGAGGCTTACCGGCTGTCGGGCAGCCTGCCTCTCAGTGCTCCGCTGAATCGCAGGGTGGAAGCTCATCGGGAATGTCGGAATTGGACAGTAAACACATCCAAGGATCAAGCAGTTATGGTGAAGCGAGAAGCTCGTCACAAGAGCGAGGCAACCCTGAGGCTGCAGGTTCTTCAGGGTCGAAGATGTGTGAGAACCCATCTGGCAGTTCCAAAACAGAGACGAAAAATCCATCCAAGAAACCCGATTCAGGTGAGAACAGGGGAAGAGAAGCGGGAACGACATCGATGGAAGACATGCCGTGTGTGTTTACAATAGGGGACGGGCCAGATGGGAGAAGGGTGGAAGGAATTCTTTACAAGTATGGAAAAGGTGAGGAAGTTAGGATAATGTGTGTTTGCCATGGGAAGTTTCTGTCACCAGCTGAGTTTGTGAAGCATGCTGGTGGAAAAAATGTGGCTCATCCCTTAAGACATATAGTTGTCAATCCCAATTCTGGTCCCTGTTTGTGA 1164 50.34 MGEANEGGSRGMEKVPLQTEKYPTDLLQRFLCSNSHQTQIRAFNEEEEEDGEEIELNLGLSLGGRFGVDKNSKKLIRSSSIAGTMLLRDDEASTPAAVSYPAALIRTSSLPPETEEEWRKRKELQTLRRMEAKRRRFEKQRNKDGIGMGTGGCFEEERREIEGLTGLNLREKRPGLAISTVAPPFGLPTWAAAARQALTGGIVDEVGKGKGGCASGGGGGLPAVGQPASQCSAESQGGSSSGMSELDSKHIQGSSSYGEARSSSQERGNPEAAGSSGSKMCENPSGSSKTETKNPSKKPDSGENRGREAGTTSMEDMPCVFTIGDGPDGRRVEGILYKYGKGEEVRIMCVCHGKFLSPAEFVKHAGGKNVAHPLRHIVVNPNSGPCL 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34514117 34516770 + CcPI632755_05g026370.1 Cco05g2637 180265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2637 387 Pfam Putative nuclear localisation signal in Ninja/AFP proteins 104 140 IPR032310 -
Cco05g2637 387 MobiDBLite consensus disorder prediction 228 292 - -
Cco05g2637 387 MobiDBLite consensus disorder prediction 221 325 - -
Cco05g2637 387 PANTHER AFP HOMOLOG 2 11 382 IPR031307 GO:0005634(PANTHER)|GO:0007165(InterPro)|GO:0009737(PANTHER)|GO:0045892(PANTHER)
Cco05g2637 387 Pfam Tify domain binding domain 346 379 IPR032308 -
Cco05g2637 387 Pfam Ethylene-responsive binding factor-associated repression 49 83 IPR012463 -
Cco05g2637 387 Coils Coil 120 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2637 Cco-Chr5:34514117 Cco07g0208 Cco-Chr7:2116226 5.50E-19 dispersed
Cco01g1765 Cco-Chr1:30390968 Cco05g2637 Cco-Chr5:34514117 5.10E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2637 - - - 0.0