Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2639 ATGTGGAAAAGAGTTCTGTGTTCAATTCCTCACAGGTCGTTTTCCTCTGCGCCAGAAACCCCATCTCTCTACTCCTTCCTCCAACCCTCTCTTTTTGCCCTAAAGAGAACCCCATTTTCGCCTTCTCAAGACTCCACCGACCTCCGTCAGGATCCAACTCCTCAAATTTTAACTCCAGAACGCGTCGCCGCCGTAGAAACGGCCCTCCACAAGTCCCTCCTCACCAGCGACACTGATGAGGCATGGAAATCCTTCAAATTGCTCACGAGAAGCTCTGTTTTCCCATGTAAGTCTCTTACCAATTCACTTATTGCTCACTTGTCCTCAATTGGGGACGTTCATAATCTGAAAAGGGCCTTTGCATCTGTGGTGTTTGTTATTGAGAAGAAACCTGAACTGTTGGATTTTGGATCTGTTAAAGCTTTATTGGCTTCTGTGAAATGTGCCAACACTGCTGCCCCTGCTCTTTCTTTGATCAAATGCATGTTTAAGAATCGATGCTTCGTGCCTTTTAGTGTCTGGGGCAATGAACTTGTTGATATTTGTAGACAGAATGGGAGTTTGATTCCCTTTTTAAGAGTTTTTGAAGAGAACTGTAGGATTGCTTTAGATGAGAGCTTGGATTTTATGAAACCAGACCTTATTGCTTGTAATGCAGCACTTGAAGGGTGTTGCTATGAGCTTGAATCTGTAACAGATGCCGAGAAAGTTGTTGAAACGATGTCACTTTTGTATCTTCGGCCTGATGAAGTGAGTTTTGGAGCTCTTGCTTATTTGTATGCATTGAAGGGGCTTGAACAGAAGATAATAGAGTTAGAAGTCTTGATGGGAAATTTTGGTTTTAATCATAAAGATCTCTTTTTCAGTAGTTTGATTAGTGGATACGTTCATGCGAGCAACTTTGCTGCTGTTTCCAAGACTATGTTGCGTAGCTTAAAAGATGAATGTGGAGCACATGTACATTTTGGTGAAAAAACATATTTGGAAATGGTTAAGGGGTTTATTCAAAGTGGAAATCTGAAGGAATTATCTGCATTGATTGTCAATGCTAAGAATTTGGAGTCTTCATCAGAAGTTGATGGATCTATTGGATTTGGTATCATTAATGCATGTGTTAATATTGGATGGTTAGATAAGGCGCATGACATTCTGAATGAAATCAATTCCCAGGGAGTTTCCCTGGGCCTTGGAGTCTATCTGCCAATCTTGAAAGCTTACAGGAAGGAGCATCGAACAGCTGAAGCCACCCAATTAATCATGGATATTAGCAGTTCTGGGCTTCAGTTGGACACAGAGAGTTATGATGCTCTAATAGAGGCATCGATGTCAAACCAAGATTTTCAGTCAGCTTTTGCTTTGTTCAGGAATATGAGAGAAACAAGAAAATCTGACATGAAAGCTAGTTATCTAACTATTATGACTGGCTTAATGGAGAACCATAGGCCTGAGTTGATGGCTGCCTTCTTAGATGAAGTTGTTGAAGATCCTCTTGTGGAAGTTGGAACTCATGATTGGAACTCTATTATACATGCCTTTTGCAAAGCTGGAAGACTCGAGGATGCGAGGAGAACATTCCGAAGAATGAAATTTCTGCAGTTTGAACCAAATGAGCAGACCTTCTTGTCCCTAATTAATGGCTATGTGTCTGCAGAGAGATATTTCTGTGTTCTGATGCTGTGGAACGAACTTAAGTGGAAGGTTACAGCAAATGGGGAGACAGGTATCAAACTTGACAACAACTTGGTTGATGCATTCCTGTATGCTTTGGTCAAGGGAGGTTTCTTCGATGCCGTGATGCAAGTCGTTGAAAAAACTAAGGATACGAAGATCTTTGTTGATAAGTGGAAGTATAAGCAAGCATTCATGGAGACTCATAAGAAACTCAAAGTGGCAAAGTTGAGGAGGAGGAACCACAGGAAAATGGAATCATTAATTGCTTTCAAGAACTGGGCTGGTCTGAATGCTTGA 1968 41.31 MWKRVLCSIPHRSFSSAPETPSLYSFLQPSLFALKRTPFSPSQDSTDLRQDPTPQILTPERVAAVETALHKSLLTSDTDEAWKSFKLLTRSSVFPCKSLTNSLIAHLSSIGDVHNLKRAFASVVFVIEKKPELLDFGSVKALLASVKCANTAAPALSLIKCMFKNRCFVPFSVWGNELVDICRQNGSLIPFLRVFEENCRIALDESLDFMKPDLIACNAALEGCCYELESVTDAEKVVETMSLLYLRPDEVSFGALAYLYALKGLEQKIIELEVLMGNFGFNHKDLFFSSLISGYVHASNFAAVSKTMLRSLKDECGAHVHFGEKTYLEMVKGFIQSGNLKELSALIVNAKNLESSSEVDGSIGFGIINACVNIGWLDKAHDILNEINSQGVSLGLGVYLPILKAYRKEHRTAEATQLIMDISSSGLQLDTESYDALIEASMSNQDFQSAFALFRNMRETRKSDMKASYLTIMTGLMENHRPELMAAFLDEVVEDPLVEVGTHDWNSIIHAFCKAGRLEDARRTFRRMKFLQFEPNEQTFLSLINGYVSAERYFCVLMLWNELKWKVTANGETGIKLDNNLVDAFLYALVKGGFFDAVMQVVEKTKDTKIFVDKWKYKQAFMETHKKLKVAKLRRRNHRKMESLIAFKNWAGLNA 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34523171 34525138 - CcPI632755_05g026390.1 Cco05g2639 180267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2639 655 Pfam PPR repeat family 505 548 IPR002885 -
Cco05g2639 655 Gene3D Tetratricopeptide repeat domain 109 279 IPR011990 GO:0005515(InterPro)
Cco05g2639 655 NCBIfam pentatricopeptide repeat 505 537 IPR002885 -
Cco05g2639 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Cco05g2639 655 Gene3D Tetratricopeptide repeat domain 461 629 IPR011990 GO:0005515(InterPro)
Cco05g2639 655 Gene3D Tetratricopeptide repeat domain 348 460 IPR011990 GO:0005515(InterPro)
Cco05g2639 655 Pfam PPR repeat 367 392 IPR002885 -
Cco05g2639 655 PANTHER BNAC05G43320D PROTEIN 15 654 - -
Cco05g2639 655 Pfam Pentatricopeptide repeat domain 418 461 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2639 Cco-Chr5:34523171 Cco09g0694 Cco-Chr9:6192712 9.30E-51 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2639 - - - 0.0