Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g2641 | ATGCATATATATCCGAATGACTGGAATGGTAGAGGATCGGCGTTGGCTGGATTCTTGTGTGGTTTTGGCAACGGTCTGGAGTTCATGAGCGGTCAAGGACCTGGATATGCAGCGTCAGCTTCTGTGCAGCGGTTGTTTCAGGCGCTTCCACTTGTGAGCACGTTTTGGGGAATTGTTCTGTTTGGTGAGTACCATAAATCGTCAAGGAAAACATACATGTTACTTGTTATCACCTTGTTCATGTTTACAGTGGCCGTTGGGGTCCTAATGGCTTCATCAGGACATTGGCATCGGAGTAGGATTGCAACTTTTTGA | 315 | 46.67 | MHIYPNDWNGRGSALAGFLCGFGNGLEFMSGQGPGYAASASVQRLFQALPLVSTFWGIVLFGEYHKSSRKTYMLLVITLFMFTVAVGVLMASSGHWHRSRIATF | 104 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 34537830 | 34538240 | - | CcPI632755_05g026410.1 | Cco05g2641 | 180269 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g2641 | 104 | PANTHER | UREIDE PERMEASE 1-RELATED-RELATED | 2 | 95 | IPR030189 | GO:0005274(PANTHER)|GO:0015505(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0022857(InterPro)|GO:0071705(InterPro) | |
| Cco05g2641 | 104 | Pfam | Ureide permease | 3 | 92 | IPR009834 | GO:0016020(InterPro)|GO:0071705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g2641 | Cco-Chr5:34537830 | Cco09g0860 | Cco-Chr9:8101983 | 2.00E-32 | dispersed | |
| Cco05g2640 | Cco-Chr5:34526907 | Cco05g2641 | Cco-Chr5:34537830 | 1.80E-29 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g2641 | - | - | - | 0.0 |