Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2642 ATGGCTGTTTTCGTGTTCTTAGTGTTTGTTCTTGCGCTAACTGGTCGATCTTATGCCAACTATTGCTTGTGTAGAGATGGGGCAACCCAACAAGCCCTTCAGAAGGCACTGGACTATGCTTGTGGAGCTGGAGCTGACTGTTCTCCAATCCTCTCCAATGGCGCTTGTTTCCAGCCCAACACTGTCAAAGATCACTGTAATTACGCTGTCAATAGTTATTTCCAGCGAAAGGGGCAAGTCCAAGGAAGCTGTGACTTTAACGGCGCCGCCACGCCCAGCGTTACCCTTACTGCCTCTGTGCCCTCTGGTTGTGTCTATCCTTCTAGCCCCAGCAATGCGGGAACATCGCCGACGAACTCCGGCGGAACCACACCGACAATGACACCAGGGACGCCGTCGACGACGAATCCAGGAATGACGCCGACGGTGTTCGGCAACGGAATCAGCCCGAGTGGGAGCGGCTCCGGTTTCAACGACGGCAGCGGCGGCGTGGGTTTCAATGAAATGAGGAACTTGCTTTTGGCAGTGGGCCTAACTCTGTGGCTTTCCGTATTGTTTCTCTGGGGATGA 570 54.04 MAVFVFLVFVLALTGRSYANYCLCRDGATQQALQKALDYACGAGADCSPILSNGACFQPNTVKDHCNYAVNSYFQRKGQVQGSCDFNGAATPSVTLTASVPSGCVYPSSPSNAGTSPTNSGGTTPTMTPGTPSTTNPGMTPTVFGNGISPSGSGSGFNDGSGGVGFNEMRNLLLAVGLTLWLSVLFLWG 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34542774 34544023 - CcPI632755_05g026420.1 Cco05g2642 180270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2642 189 PANTHER BETA-1,3 GLUCANASE 10 109 IPR044788 -
Cco05g2642 189 Pfam X8 domain 21 91 IPR012946 -
Cco05g2642 189 SMART X8_cls 20 106 IPR012946 -
Cco05g2642 189 MobiDBLite consensus disorder prediction 109 156 - -
Cco05g2642 189 Gene3D - 17 108 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1774 Cco-Chr1:30452496 Cco05g2642 Cco-Chr5:34542774 1.20E-30 wgd
Cco05g2642 Cco-Chr5:34542774 Cco06g1766 Cco-Chr6:28121813 8.70E-34 wgd
Cco05g2642 Cco-Chr5:34542774 Cco08g1193 Cco-Chr8:23665609 8.10E-40 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2642 - - - 0.0