Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2643 ATGGCTTCGATCACAGCCGTAATTCAGTCTCCAATTCATCGGTTACCTTCCTTTCGATTGTCGTCTCCTAATAGAACAGTTCCCGCCAATTATTTCGTTCTTCAATGTCGATCACTTGCTTCTAAAGCTTTGAACTCGCCGTTTTCACCGTTCACGGAGAATCGAACTGTTTCGCCATCGGTGGAACTATCTAGCAAGGCTATTGGGCTCTTAAGTTCTAGACAACCGTTAAAGTCTCGAAGTGTAGTTCGTCTGCCGGTGGTGAGGGCGGCTGCAGCTGAAGCCGGCGGAGCTTCTGATGGGTTGAATAGCCCTTCGAAGAGCTTTGCTGCAAGATTTCCAGCACTCATTACTGGTTTCTACTTCTTTATGTGGTACTTTTTAAATGTTATCTTCAACATACTCAACAAAAAAGTTTACAATTATTTTCCATATCCATACTTTGTCTCTGTCATACATCTTCTTGTTGGAGCTGGATATTGTCTCATTTCTTGGGCTGTAGGTCTCCCAAAACGTGCCCCGATAGATAAGGAGCTCTTGCTATTATTGACTCCAGTTTCGCTATGTCATGCACTTGGACATGTGATGTCAAATGTTTCATTTGCAGCTGTTGCTGTGTCCTTCACTCACACCATTAAAGCTCTGGAGCCATTCTTTAATGCAGCTGCTTCTCAATTTGTTTTGGGACATCAAATTCCCTTCAGCTTGTGGCTTTCTCTAGCACCTGTTGTTTTAGGTGTGTCAATGGCATCACTAACGGAACTTTCCTTTAATTGGACTGGCTTTGTGAGTGCAATGATTTCAAACGTTGCATTTACCTATAGAAGTATCTATTCGAAGAAAGCAATGACAGGAATGGACAGCACAAACGTGTATGCATACACCACAATAATCGCTCTTTTGTTTTGCATTCCTCCTGCAGTTATGATTGAGGGACCGCAGTTGCTGCAGCATGGTTTTAAGGATGCCATTGCCAAAGTGGGTCTACAAAAGTTCCTGTCTGACCTTTTCTGGATCGGCATGTTTTATCATCTATACAATCAGCTTGCTGCTAATACTCTTGAACGTGTTGCACCATTAACACACGCTGTAGGAAACGTATTGAAGCGAGTTTTTGTGATTGGATTCTCCATTGTTGTTTTTGGCAATAAGATTTCAACTCAAACTGGAATTGGTACTGCTATAGCAATTGCCGGTGTCGCCATCTACTCCTTGATTAAAGCAAACTTGGAGGAACATAAACGGAGGGCTGCTAAAATTCCATCATCATAG 1272 42.53 MASITAVIQSPIHRLPSFRLSSPNRTVPANYFVLQCRSLASKALNSPFSPFTENRTVSPSVELSSKAIGLLSSRQPLKSRSVVRLPVVRAAAAEAGGASDGLNSPSKSFAARFPALITGFYFFMWYFLNVIFNILNKKVYNYFPYPYFVSVIHLLVGAGYCLISWAVGLPKRAPIDKELLLLLTPVSLCHALGHVMSNVSFAAVAVSFTHTIKALEPFFNAAASQFVLGHQIPFSLWLSLAPVVLGVSMASLTELSFNWTGFVSAMISNVAFTYRSIYSKKAMTGMDSTNVYAYTTIIALLFCIPPAVMIEGPQLLQHGFKDAIAKVGLQKFLSDLFWIGMFYHLYNQLAANTLERVAPLTHAVGNVLKRVFVIGFSIVVFGNKISTQTGIGTAIAIAGVAIYSLIKANLEEHKRRAAKIPSS 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34550158 34554051 - CcPI632755_05g026430.1 Cco05g2643 180271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2643 423 SUPERFAMILY Multidrug resistance efflux transporter EmrE 298 405 - -
Cco05g2643 423 PANTHER SOLUTE CARRIER FAMILY 35 112 405 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Cco05g2643 423 Pfam Triose-phosphate Transporter family 118 404 IPR004853 -
Cco05g2643 423 SUPERFAMILY Multidrug resistance efflux transporter EmrE 155 253 - -
Cco05g2643 423 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 116 414 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2111 Cco-Chr4:34973926 Cco05g2643 Cco-Chr5:34550158 2.70E-148 dispersed
Cco05g1659 Cco-Chr5:23174210 Cco05g2643 Cco-Chr5:34550158 5.40E-62 dispersed
Cco05g2643 Cco-Chr5:34550158 Cco10g0522 Cco-Chr10:6216407 3.40E-62 dispersed
Cco05g2643 Cco-Chr5:34550158 Cco04g1994 Cco-Chr4:34114037 6.60E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2643 K15283 - csv:101221040 691.804