Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2645 ATGTCGTCCGCCGAGAAGGAAAGAGAGACGCAGGTCTACATGGCCAAGCTTGCAGAACAGGCCGAACGCTATGACGAAATGGTGGAGTGTATGAAGAAAGTTGCTAAACTAGACGTTGAGCTAACCGTGGAAGAGAGAAACTTGCTTTCTGTTGGATACAAAAATGTTATAGGTGCTAGACGAGCTTCTTGGCGCATCATGTCCTCGATTGAACAGAAGGAAGAGTCCAAAAGCAATGAGAATAATGTTAAACTTATTAAGAGTTACCGTCAGAAGGTGGAGGAAGAGCTTTCCAAGATCTGTACCGATATTCTGACTATTATTGACAAGCACCTCATCCCTTCTTCAACCTCTTCAGAAGCATCGGTTTTCTATTACAAGATGAAAGGTGACTATTACCGATATCTTGCTGAGTTCAAAACAGATCAAGAAAGAAAGGAGGCAGCTGACCAGTCATTGAAGGGATACGAGACTGCTTCGACCACCGCCAATACCGAACTTCCATCAACTCACCCTATCCGTCTTGGCCTTGCCCTCAACTTTTCTGTCTTCTACTATGAGATTATGAATTCCCCTGAAAGGGCTTGCCACTTGGCTAAACAAGCTTTTGACGAGGCAATTGCAGAGTTGGATACTTTGAGTGAGGAATCATACAAGGACAGTACCCTCATAATGCAGTTGCTGAGAGATAACCTCACTCTCTGGACATCTGATTTACCAGAAGATGGAGGTGAAGAGAACGTCAAAGGTGAGGATTCCAAACCAGCAGCACCAGCCCCCGAGCATTAA 789 44.87 MSSAEKERETQVYMAKLAEQAERYDEMVECMKKVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKSNENNVKLIKSYRQKVEEELSKICTDILTIIDKHLIPSSTSSEASVFYYKMKGDYYRYLAEFKTDQERKEAADQSLKGYETASTTANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEENVKGEDSKPAAPAPEH 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34563465 34565911 - CcPI632755_05g026450.1 Cco05g2645 180273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2645 262 ProSitePatterns 14-3-3 proteins signature 2. 218 237 IPR023409 -
Cco05g2645 262 Coils Coil 14 34 - -
Cco05g2645 262 PANTHER 14-3-3 PROTEIN 7 241 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Cco05g2645 262 MobiDBLite consensus disorder prediction 242 262 - -
Cco05g2645 262 Gene3D - 1 250 IPR036815 -
Cco05g2645 262 SMART 1433_4 8 250 IPR023410 -
Cco05g2645 262 SUPERFAMILY 14-3-3 protein 7 238 IPR036815 -
Cco05g2645 262 PIRSF 14-3-3 2 248 IPR000308 -
Cco05g2645 262 PRINTS 14-3-3 protein zeta signature 120 142 IPR000308 -
Cco05g2645 262 PRINTS 14-3-3 protein zeta signature 209 238 IPR000308 -
Cco05g2645 262 PRINTS 14-3-3 protein zeta signature 40 69 IPR000308 -
Cco05g2645 262 PRINTS 14-3-3 protein zeta signature 155 181 IPR000308 -
Cco05g2645 262 PRINTS 14-3-3 protein zeta signature 89 113 IPR000308 -
Cco05g2645 262 PRINTS 14-3-3 protein zeta signature 182 208 IPR000308 -
Cco05g2645 262 FunFam 14-3-3 protein epsilon 3 249 - -
Cco05g2645 262 Coils Coil 196 216 - -
Cco05g2645 262 ProSitePatterns 14-3-3 proteins signature 1. 46 56 IPR023409 -
Cco05g2645 262 Pfam 14-3-3 protein 14 236 IPR023410 -
Cco05g2645 262 MobiDBLite consensus disorder prediction 237 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2645 Cco-Chr5:34563465 Cco08g1195 Cco-Chr8:23681446 4.00E-130 dispersed
Cco05g2645 Cco-Chr5:34563465 Cco08g1263 Cco-Chr8:24433952 4.30E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2645 K06630 - csv:101221275 485.723