Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2647 ATGATGGGTCTGAAAAGTGGAGCTGAGGGTACGATGCTGAGTATGGTAACATTATTAGATTTGGTTTTACACTCTATTATTCCAACTTCCAACTTTCCAACACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAAAAACATTAATAATATAATGAGTAACTCCGAAGATAAATCTTCCATGGATTTGGTTCAACCTTCTGACCACCTCTGTTATGTCAAATGCAACTTCTGTAACACTCTCCTTGCGGTTGGGATTCCATGCAGACGTTTATTGGATACGGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCATTTTTAACCACAAGACCTCCTTTACAAGGCCAATGCATTGATCATCCTCTAAATTTTCAGGGTGCGTCCACGTCGTCCACTTCCACGTCCTCTTCAATGCCAAATGAGTCCCCTTCTCCAAATTTTGTTGTTAAACCCCCTGAGAAGAAACACAGACTTCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGCAGCAAAAAACTGGGCAAGGTACATCCCAAATTCAGCTGCTGGGTCGGTTTCTGGAACTCATCACAACAACGAATGA 678 41.15 MMGLKSGAEGTMLSMVTLLDLVLHSIIPTSNFPTPSSSSSSSSSSSSSSSSSSSSSKNINNIMSNSEDKSSMDLVQPSDHLCYVKCNFCNTLLAVGIPCRRLLDTVTVKCGHCSNLSFLTTRPPLQGQCIDHPLNFQGASTSSTSTSSSMPNESPSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHHNNE 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34584211 34585847 + CcPI632755_05g026470.1 Cco05g2647 180275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2647 225 MobiDBLite consensus disorder prediction 32 71 - -
Cco05g2647 225 PANTHER PROTEIN YABBY 6-RELATED 77 221 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
Cco05g2647 225 MobiDBLite consensus disorder prediction 140 165 - -
Cco05g2647 225 SUPERFAMILY HMG-box 154 206 IPR036910 -
Cco05g2647 225 Gene3D High mobility group box domain 157 210 IPR036910 -
Cco05g2647 225 Pfam YABBY protein 77 208 IPR006780 GO:0007275(InterPro)
Cco05g2647 225 MobiDBLite consensus disorder prediction 140 156 - -
Cco05g2647 225 CDD HMG-box_SF 169 205 - -
Cco05g2647 225 FunFam protein CRABS CLAW isoform X3 160 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2647 K25796 - - csv:101219863 283.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2631 Cco-Chr5:34458203 Cco05g2647 Cco-Chr5:34584211 6.40E-111 dispersed
Cco05g2647 Cco-Chr5:34584211 Cco10g0299 Cco-Chr10:3552306 8.50E-28 dispersed
Cco05g2647 Cco-Chr5:34584211 Cco06g1303 Cco-Chr6:23255525 3.10E-30 transposed
Cco05g2647 Cco-Chr5:34584211 Cco11g0329 Cco-Chr11:3311911 3.10E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g2631 . 65 233 C2C2-YABBY Transcription Factor Family AT1G69180 55.2 8.6e-47 183.7
Cco05g2647 . 65 222 C2C2-YABBY Transcription Factor Family AT1G69180 54.7 4.0e-44 174.9
Cco01g0399 . 82 242 C2C2-YABBY Transcription Factor Family AT2G45190 58.6 2.0e-42 169.1
Cco02g2409 . 1 174 C2C2-YABBY Transcription Factor Family AT1G08465 65.9 1.1e-54 209.9
Cco01g0399 . 38 232 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.5e-43 172.9
Cco06g1303 . 6 178 C2C2-YABBY Transcription Factor Family AT1G08465 54.2 3.8e-42 168.3
Cco11g0329 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 7.2e-41 164.1
Cco10g0299 . 19 194 C2C2-YABBY Transcription Factor Family AT1G08465 52.3 3.0e-39 158.7
Cco01g0399 . 49 241 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 4.3e-50 194.9
Cco05g2813 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 54.3 5.1e-40 161.8
Cco06g1303 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 71.0 1.0e-62 236.5
Cco11g0329 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 4.3e-61 231.1
Cco02g2409 . 1 174 C2C2-YABBY Transcription Factor Family AT2G26580 59.2 1.1e-48 189.9
Cco01g0399 . 40 204 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.2e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59387 PF04690 YABBY 2.20E-46 CL0114 Cco TF