Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2647 ATGATGGGTCTGAAAAGTGGAGCTGAGGGTACGATGCTGAGTATGGTAACATTATTAGATTTGGTTTTACACTCTATTATTCCAACTTCCAACTTTCCAACACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAAAAACATTAATAATATAATGAGTAACTCCGAAGATAAATCTTCCATGGATTTGGTTCAACCTTCTGACCACCTCTGTTATGTCAAATGCAACTTCTGTAACACTCTCCTTGCGGTTGGGATTCCATGCAGACGTTTATTGGATACGGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCATTTTTAACCACAAGACCTCCTTTACAAGGCCAATGCATTGATCATCCTCTAAATTTTCAGGGTGCGTCCACGTCGTCCACTTCCACGTCCTCTTCAATGCCAAATGAGTCCCCTTCTCCAAATTTTGTTGTTAAACCCCCTGAGAAGAAACACAGACTTCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGCAGCAAAAAACTGGGCAAGGTACATCCCAAATTCAGCTGCTGGGTCGGTTTCTGGAACTCATCACAACAACGAATGA 678 41.15 MMGLKSGAEGTMLSMVTLLDLVLHSIIPTSNFPTPSSSSSSSSSSSSSSSSSSSSSKNINNIMSNSEDKSSMDLVQPSDHLCYVKCNFCNTLLAVGIPCRRLLDTVTVKCGHCSNLSFLTTRPPLQGQCIDHPLNFQGASTSSTSTSSSMPNESPSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHHNNE 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34584211 34585847 + CcPI632755_05g026470.1 Cco05g2647 180275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2647 225 MobiDBLite consensus disorder prediction 32 71 - -
Cco05g2647 225 PANTHER PROTEIN YABBY 6-RELATED 77 221 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
Cco05g2647 225 MobiDBLite consensus disorder prediction 140 165 - -
Cco05g2647 225 SUPERFAMILY HMG-box 154 206 IPR036910 -
Cco05g2647 225 Gene3D High mobility group box domain 157 210 IPR036910 -
Cco05g2647 225 Pfam YABBY protein 77 208 IPR006780 GO:0007275(InterPro)
Cco05g2647 225 MobiDBLite consensus disorder prediction 140 156 - -
Cco05g2647 225 CDD HMG-box_SF 169 205 - -
Cco05g2647 225 FunFam protein CRABS CLAW isoform X3 160 219 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2631 Cco-Chr5:34458203 Cco05g2647 Cco-Chr5:34584211 6.40E-111 dispersed
Cco05g2647 Cco-Chr5:34584211 Cco10g0299 Cco-Chr10:3552306 8.50E-28 dispersed
Cco05g2647 Cco-Chr5:34584211 Cco06g1303 Cco-Chr6:23255525 3.10E-30 transposed
Cco05g2647 Cco-Chr5:34584211 Cco11g0329 Cco-Chr11:3311911 3.10E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59387 PF04690 YABBY 2.20E-46 CL0114 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2647 K25796 - csv:101219863 283.108