Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2648 ATGGAGAATTCTAAAGAAAACAAGTTTGTGTGCAACTTTTGCCACAAGAGCTTCACGTGTGGGAAGTCTTTGGGAGGTCATATCAGAATTCACAAGAATGAGAAATCAACCCGAGTTGCAGAGAAGCAAAGGGAAAGAAGCTTGAAGTTTCAAGTTCCGATAGAGAGGAGAAGAAGCAAGAGAGATTTAGAATCGGAGGTTGGTAATGGGAATTCAGGCTATGGCTTGAGAGAGAACCCCAAAATAACACGGAGGTTTGCTGATTCGGGATACAGTTCAAGGCAGGAGAAGTTTTGTAGAGAATGTGGACAAGGGTTTCAGTCCTCAGAAGCTTTGAGTTGGCACTTGGCTTGTCACTCTGGAAGCGAAAGGGAAAATAGAAGGCTTGAATACAATTATGGGATCACATATCAGAAGCGGGAGTTTATAGAAGAAAATCAATCGGACATTCCTGAGAGAGTACGAGAGGCGGCTATGTGCTTGATGATGATGTCTAAAGCTCCGAGATTTTCAGGATTGGAAGGTCTGAATTCGGCTGCGGAATCCTCTGATAGTAAATCATCTTCTCGTCATTTTAGGGAAAGTGACACATCTGCTTCTAACTCTAATGGAGGACTAGAAATGAAAGAAGTCACAGGTAGGATCAACAAGTTGGAAGTTTCTGAATTCGACGGTGAGAATTCCGACTCTGATAATTTCAGGAAAGAAATTTGCAAGAAGGTTAAATTGAAACTATCTGTTCATCGGGCTCTTATGGATGAAGAATATAAGAAACCAGATCTCAAATTTGGAGTCAGGGTAGGAAGAGCAAGTGCAGATATTCTAAAGAATTCGATGAAAACTAAGAAAGATGATCAAGTGCATGCATCTTACAAGTACGAGCTGAGAAAGAGGTTGAAAAATGGATCATACAGTCCTGATCTCTGGGAGGGATCAAGCAAGAAGATGCCTAGCGAGAACTTCCGTTCTCATGACAGAGAAACCTATACAAGAATGAGCAATGGCTGCGAGTGGACGCATCAGTCAGGTGAAAACAGCGTAAATACCACTACCAATTCCATCTCTATACCATCTAGGGAGTTAATTGAGTCAAGCAATGGCAAAAACAAGGGTCACCAGGACACTTCTGGAAATGAAGAGAAGAAATTAGGGCCCAAGAGAAAACACAAGTGCCCAATTTGCTTCAAAGCCTTTAAATCAGGCCAGGCATTGGGGGGTCATAAGAGGTCCCATGTGGTCGGAAGTTTAGAGGATGCGTCTATAGTGACAAGGCAAGAGTCCAATGGGATAACTGGTCTAATTGATCTAAATGTTCCTGCTCCTATGGAAGAAGAGGAAAGTGGGAGATGGGATTAA 1356 42.48 MENSKENKFVCNFCHKSFTCGKSLGGHIRIHKNEKSTRVAEKQRERSLKFQVPIERRRSKRDLESEVGNGNSGYGLRENPKITRRFADSGYSSRQEKFCRECGQGFQSSEALSWHLACHSGSERENRRLEYNYGITYQKREFIEENQSDIPERVREAAMCLMMMSKAPRFSGLEGLNSAAESSDSKSSSRHFRESDTSASNSNGGLEMKEVTGRINKLEVSEFDGENSDSDNFRKEICKKVKLKLSVHRALMDEEYKKPDLKFGVRVGRASADILKNSMKTKKDDQVHASYKYELRKRLKNGSYSPDLWEGSSKKMPSENFRSHDRETYTRMSNGCEWTHQSGENSVNTTTNSISIPSRELIESSNGKNKGHQDTSGNEEKKLGPKRKHKCPICFKAFKSGQALGGHKRSHVVGSLEDASIVTRQESNGITGLIDLNVPAPMEEEESGRWD 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34592514 34593869 + CcPI632755_05g026480.1 Cco05g2648 180276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2648 451 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Cco05g2648 451 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Cco05g2648 451 Pfam C2H2-type zinc finger 99 120 IPR013087 -
Cco05g2648 451 Pfam C2H2-type zinc finger 9 31 IPR013087 -
Cco05g2648 451 Pfam C2H2-type zinc finger 389 411 IPR013087 -
Cco05g2648 451 ProSitePatterns Zinc finger C2H2 type domain signature. 391 411 IPR013087 -
Cco05g2648 451 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Cco05g2648 451 MobiDBLite consensus disorder prediction 59 78 - -
Cco05g2648 451 MobiDBLite consensus disorder prediction 336 386 - -
Cco05g2648 451 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Cco05g2648 451 ProSiteProfiles Zinc finger C2H2 type domain profile. 389 411 IPR013087 -
Cco05g2648 451 MobiDBLite consensus disorder prediction 336 372 - -
Cco05g2648 451 Gene3D Classic Zinc Finger 1 68 - -
Cco05g2648 451 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 128 - -
Cco05g2648 451 SUPERFAMILY beta-beta-alpha zinc fingers 98 411 IPR036236 -
Cco05g2648 451 SUPERFAMILY beta-beta-alpha zinc fingers 5 36 IPR036236 -
Cco05g2648 451 MobiDBLite consensus disorder prediction 175 209 - -
Cco05g2648 451 SMART c2h2final6 389 411 IPR013087 -
Cco05g2648 451 SMART c2h2final6 9 31 IPR013087 -
Cco05g2648 451 SMART c2h2final6 97 119 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2648 Cco-Chr5:34592514 Cco07g0750 Cco-Chr7:14911701 3.40E-12 dispersed
Cco01g1783 Cco-Chr1:30551126 Cco05g2648 Cco-Chr5:34592514 5.70E-28 wgd
Cco05g2648 Cco-Chr5:34592514 Cco06g1778 Cco-Chr6:28215971 4.80E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59388 PF13912 zf-C2H2_6 6.30E-09 CL0361 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2648 - - - 0.0