Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2649 ATGGCAGCATTGCGATTATCATCGCCCTGTGTTAATTCTAATAATCCACAATCCCCAAAACTCAAAATCCAATCCACCTTCGCTTCAGAGTCTAGTTTCGGGACCAATTGGACGAGGCTTCTGTTGTTCAGAGCTTCGTTCTCGAGTTTTTCAAGAAGGAAGCTGTGCATTAGAAACGTAGCCAGCGATCGACAGAAACAACTGAAGGAGCCGGTCAACGGAGAAGTTGTAGACGACTTGGATAGCTTTCTTCCAGATTCAGCGTCCATTGCTGCAAGTATTAAGTACCATTCGGAATTCACGCCTTCTTTCTCACCGGAGGGATATGGGCTTTCTAAGGCATACTATGCAACTGCTGAAAGTGTTCGTGATATGCTTATCATCAACTGGAATGCTACGTATGAGTACTATGAAAAGATGAATGTGAAGCAGGCCTACTATCTGTCGATGGAGTTTTTACAGGGTAGGGCATTGCTAAATGCAATTGGAAATCTGGAACTATCAGGAATTTATGCAGATGCTTTAAGAGTGTTAGGATGTAATCTCGAGGAGGTAGCACGGCAGGAATCGGATGCTGCACTAGGAAATGGAGGATTAGGGCGGCTTGCTTCCTGCTTTCTGGACTCCCTGGCAACACTAAACTATCCAGCATGGGGATATGGACTGAGATACAAGTATGGTTTGTTCAAACAGCTTATTACAAAAGATGGACAGGAGGAAGTGGCCGAAAATTGGCTAGAGATGGGCAATCCCTGGGAAATTGCAAGACACGACATCTCCTATCCTGTGAAATTCTATGGTGAAGTCATTTCAGGCGCAGATGGAAGTAAGCAATGGATTGGAGGAGAAAATATCACTGCTGTTGCCTATGATGTCCCAATACCAGGTTATAAAACTAAAACCACGATAAACCTCCGTTTGTGGTCCACAAAGGTTGCTCCCGAACAATTTAATTTGAGTTCTTTCAATGTTGGAGATCATGCCAATGCATATGCAGCCATAAAGAAAGCTGAAAAGATCTGTTACGTACTGTACCCCGGAGACGAGTCACTGGAGGGAAAGACTCTTAGACTGAAACAGCAATACACATTGTGTTCTGCTTCCCTTCAAGATATTGTCGCACGTTTTGAGAGGAGATCCGGGGAGACTGTGGACTGGGAAAATTTTCCAGAAAAGGTTGCTGTGCAGATGAATGATACCCATCCTACACTTTGTATCCCTGAGCTGATGAGAATATTGATGGATGTGAAAGGGTTAACCTGGAAAGAAGCTTGGGACATCACTCGTAGAACTGTAGCCTACACAAATCATACAGTTCTGCCGGAGGCGCTGGAAAAATGGGGTTTCCCCCTTATGCAGGAACTACTTCCTCGACATGTTCAGATAATTGAAATGATTGACGAGGAGCTTATCCATTCCATCATTGCTAAGTACGGTACAAAAGATCTTGAGTTGTTGCAGCAAAAGCTGAAGCAAATGAGAGTTCTAGAAAATTTTGAATTACCAGACTCGGTAATGGAACTTCTAGTAAATTCAGCGGAGTCTGCGGTAGCAGTTGATCTCGTTGAGGAAGCTGAAATTCTGGATGAGGAATCATTACCTGGTAAAGAAGTAGACAAGAATGAAGACAAAAGTATTGCGAAGAAAATAGATATTTCATTTAAAGTTGATCCAAAGCATCCAAAGATGATTCGCATGGCTAATTTGTCTGCTGTTGGTGGATATGCTGTAAATGGTGTTGCTGAAATTCATAGTGAAATTGTTAGAACTGAAGTTTTTAGCGACTTTTATGAGTTGTGGCCTAAGAAATTTCAAAACAAAACGAACGGAGTGACACCGAGAAGATGGCTACATTTTTGCAATCCGGACCTGAGTAAAATCATCACAAAGTGGACTGGAACAGAGCACTGGGTGACAGATACTGAAAAACTGGCAATACTCCGAGAGTTCGCTGATAACGAGGATCTCCAGTCCATGTGGGAGGAAGCTAAAAGAATAAACAAATTGAAAGTTGTCTCTTTTCTTAAAGAAAAAACTGGCTATTTAGTCAGCCCTGATGCAATGTTTGACGTACAGGTAAAACGCATCCATGAATACAAGCGGCAGTTGTTGAACATCCTGGGGATCGTCTATCGTTACAAACAAATGAAAGAAATGACTCGAGAGGAAAGAGAAGCCAAGTTTGTTCCTCGAGTTTGTGTATTTGGCGGGAAAGCATTTGCTACATATGTCCAGGCCAAAAGGATTGTGAAATTCATTGTTGATGTTGGAGCTACCGTCAATAACGATCCTGATATAGGAGATCTTTTGAAGGTAGTCTTTGTTCCAGATTACAATGTGAGTGTAGCAGAAATGCTCATTCCTGGCAGTGATCTTTCCCAGCATATCAGCACGGCTGGAATGGAGGCCAGTGGTACCAGCAACATGAAGTTTGCAATGAATGGCTGTGTACTAATTGGAACATTAGATGGGGCAAATGTAGAGATAAGAGAAGAAGTTGGAGAAGACAACTTTTTCCTCTTTGGTGCAAGGGCTCATGAAATTGCTGGCCTAAGAAAAGAAAGAGCTGAAGGCAAGTTTGTTCCTGACCCACGGTTTGAGGAAGTGAAGGCCTTCGTAAGAAGTGGGGTTTTTGGTTCCAATAACTATGAAGAACTCGTGGGATCTTTAGAAGGAAATGAAGGTTATGGTCGGGCAGACTATTTCCTCGTTGGCAAGGACTTCCCTAGTTACATAGAGTGCCAAGACAGGGTTGATGAGGCCTATCGAGATCAAAAGAGATGGACCAAGATGTCGATCTTAAACACAGCTGGTTCATTCAAGTTCAGCAGTGACAGAACCATTCATGAGATCATTCCTAGGAGTCACTTGAATTCTCGAGTGAATTCAACTAAGAATCACTGCAATCCAACCTAG 2916 42.76 MAALRLSSPCVNSNNPQSPKLKIQSTFASESSFGTNWTRLLLFRASFSSFSRRKLCIRNVASDRQKQLKEPVNGEVVDDLDSFLPDSASIAASIKYHSEFTPSFSPEGYGLSKAYYATAESVRDMLIINWNATYEYYEKMNVKQAYYLSMEFLQGRALLNAIGNLELSGIYADALRVLGCNLEEVARQESDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQLITKDGQEEVAENWLEMGNPWEIARHDISYPVKFYGEVISGADGSKQWIGGENITAVAYDVPIPGYKTKTTINLRLWSTKVAPEQFNLSSFNVGDHANAYAAIKKAEKICYVLYPGDESLEGKTLRLKQQYTLCSASLQDIVARFERRSGETVDWENFPEKVAVQMNDTHPTLCIPELMRILMDVKGLTWKEAWDITRRTVAYTNHTVLPEALEKWGFPLMQELLPRHVQIIEMIDEELIHSIIAKYGTKDLELLQQKLKQMRVLENFELPDSVMELLVNSAESAVAVDLVEEAEILDEESLPGKEVDKNEDKSIAKKIDISFKVDPKHPKMIRMANLSAVGGYAVNGVAEIHSEIVRTEVFSDFYELWPKKFQNKTNGVTPRRWLHFCNPDLSKIITKWTGTEHWVTDTEKLAILREFADNEDLQSMWEEAKRINKLKVVSFLKEKTGYLVSPDAMFDVQVKRIHEYKRQLLNILGIVYRYKQMKEMTREEREAKFVPRVCVFGGKAFATYVQAKRIVKFIVDVGATVNNDPDIGDLLKVVFVPDYNVSVAEMLIPGSDLSQHISTAGMEASGTSNMKFAMNGCVLIGTLDGANVEIREEVGEDNFFLFGARAHEIAGLRKERAEGKFVPDPRFEEVKAFVRSGVFGSNNYEELVGSLEGNEGYGRADYFLVGKDFPSYIECQDRVDEAYRDQKRWTKMSILNTAGSFKFSSDRTIHEIIPRSHLNSRVNSTKNHCNPT 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34594322 34600720 - CcPI632755_05g026490.1 Cco05g2649 180277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2649 971 Gene3D Glycogen Phosphorylase B; 614 943 - -
Cco05g2649 971 PIRSF Glucan_phosphorylase_GlgP 105 969 IPR000811 GO:0005975(InterPro)|GO:0008184(InterPro)
Cco05g2649 971 ProSitePatterns Phosphorylase pyridoxal-phosphate attachment site. 802 814 IPR035090 -
Cco05g2649 971 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 85 950 - -
Cco05g2649 971 Gene3D Glycogen Phosphorylase B; 80 613 - -
Cco05g2649 971 Pfam Carbohydrate phosphorylase 550 950 IPR000811 GO:0005975(InterPro)|GO:0008184(InterPro)
Cco05g2649 971 Pfam Carbohydrate phosphorylase 177 496 IPR000811 GO:0005975(InterPro)|GO:0008184(InterPro)
Cco05g2649 971 PANTHER GLYCOGEN PHOSPHORYLASE 63 950 IPR000811 GO:0005737(PANTHER)|GO:0005975(InterPro)|GO:0005980(PANTHER)|GO:0008184(PANTHER)|GO:0008184(InterPro)|GO:0030170(PANTHER)
Cco05g2649 971 CDD GT35_Glycogen_Phosphorylase 93 950 - -
Cco05g2649 971 FunFam Alpha-1,4 glucan phosphorylase 84 512 - -
Cco05g2649 971 FunFam Alpha-1,4 glucan phosphorylase 611 943 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0648 Cco-Chr3:6573879 Cco05g2649 Cco-Chr5:34594322 1.30E-224 dispersed
Cco05g2649 Cco-Chr5:34594322 Cco07g0789 Cco-Chr7:17448361 0.00E+00 dispersed
Cco05g2649 Cco-Chr5:34594322 Cco02g2113 Cco-Chr2:33976080 1.70E-298 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2649 K00688 - csv:101221746 1728.38