Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2654 ATGGCAACAATGGCCTCCAGAGTCTTGTTCCTCGTTCTAATTTGCTTCTTTTCATTTTCATCTCCCATTTTAGCAGAATTCGTTAAAGTTTCAGTGAAAGGAGTGACCACCATTGCTGAAACTGACAACGATTTCATTTGTGCTACTATAGATTGGTGGCCTTCTAATAAATGCGATTATGGCCAATGCCCATGGGGAAAAGCTGGCGTTCCTAATTTGGATCTTCAAAACGTTATCTTAACCAAAGCAATCAAGGAGTTCAATCCTTTGAGAATCCGAGTTGGAGGATCACTTCAAGATCAAATCATTTACAGAGTTGGAAACTCGGTGAAGAAGTGTCCTCAAATGAAGAAACAGAGTGATGGTTTGTTTGGATTCAGCAAAGGTTGTTTTACCATGGAAAGATGGGATGATTTTAATGAGCTATTCAACAAAACATCAGCTCGGGTTACGTTTGGTTTGAATGCTCTGATGGGTAAAACACCAGCCAATGATGGAAGTATCAACTGGGTTGGTGATTGGGATCCTCGTAATGCTCGAGATTTCATTCGATACACTGCCTCTAAAGGATACAAAATCGATTCTTATGAACTGGGAAATGAGCTTTGTGCGAGCGGAGTTTCGGCAAGGCTTGAGCCAGATCAATATGGTAAAGATCTGACTCTAATGAGAAAAGTAGTTGAAGAGGTTTATCCTGATGCCAACAACAGACCCAAAATTCTTGGACCAGCGGGTTTCTTTGACAAAGAATGGTTCAAAACTTTCCTTCAAAACACTGCCCCAAATGTTGTGGATGGAGTCACTCACCATATTTACAATCTTGGAGCAGGTGTTGATCCTACTCTTATAAATAAGGTTCAAGACCCTTATGTTTTGGACCAAATTGCTCAAACTTTTAAGGAAGCTATGGAAGTTTCACAGAGCTTTGGACCATGGTCTAAGCCTTGGGTTGGTGAATCTGGTGGTGCTTATAACAGTGGTGGCAAAACTGTTTCTCATACTTTTGCCAATGGATTCTGGTATTTGGATCAACTGGGGATGACTGCCACATTCAATCATCAGGTTTATTGCAGACAAGCCTTGATTGGTGGAAACTATGCTTTGCTTAACACCACTAGTTTCATCCCTAACCCTGATTATTATAGCGCTCTGCTCTGGCACAGATTAATGGGAAAGAAGGTCCTCTCAGCATCCCACGACAGCTCTCCGTACCTTCGTGTTTATTCTCACTGCACCAAAAACAACGAAGGCGTTACAGTGCTTCTAATCAACATGTCAAATTCGACCACATTTGATGTAAATATTGTAAACGACAGAAGTGTTTATCCAAACTTGATGATAGGCAGCAAATTAAAGGCAAGAGAAGAGTACCATTTAACTCCCAAAGACGGCAATATTCAAAGCGACGTCATGCTTTTGAATGGAACTCCTCTTCAACTTACTCCAACCTTGGACATTCCCGACATGTCGCCCAAGCTCGTCGATCCCACTTCCGCTGTGTCGGTTGCCCCTGATTCTTACGTCTTTGTCTCCATCAAAGACTTCAAAGCTCCTGCTTGCGCCTAA 1566 42.02 MATMASRVLFLVLICFFSFSSPILAEFVKVSVKGVTTIAETDNDFICATIDWWPSNKCDYGQCPWGKAGVPNLDLQNVILTKAIKEFNPLRIRVGGSLQDQIIYRVGNSVKKCPQMKKQSDGLFGFSKGCFTMERWDDFNELFNKTSARVTFGLNALMGKTPANDGSINWVGDWDPRNARDFIRYTASKGYKIDSYELGNELCASGVSARLEPDQYGKDLTLMRKVVEEVYPDANNRPKILGPAGFFDKEWFKTFLQNTAPNVVDGVTHHIYNLGAGVDPTLINKVQDPYVLDQIAQTFKEAMEVSQSFGPWSKPWVGESGGAYNSGGKTVSHTFANGFWYLDQLGMTATFNHQVYCRQALIGGNYALLNTTSFIPNPDYYSALLWHRLMGKKVLSASHDSSPYLRVYSHCTKNNEGVTVLLINMSNSTTFDVNIVNDRSVYPNLMIGSKLKAREEYHLTPKDGNIQSDVMLLNGTPLQLTPTLDIPDMSPKLVDPTSAVSVAPDSYVFVSIKDFKAPACA 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34616226 34619564 + CcPI632755_05g026540.1 Cco05g2654 180282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2654 521 FunFam heparanase-like protein 3 65 388 - -
Cco05g2654 521 SUPERFAMILY (Trans)glycosidases 41 390 IPR017853 -
Cco05g2654 521 Pfam Glycosyl hydrolase family 79, N-terminal domain 29 346 IPR005199 GO:0016020(InterPro)|GO:0016798(InterPro)
Cco05g2654 521 PANTHER HEPARANASE-RELATED 28 521 - GO:0004566(PANTHER)|GO:0009505(PANTHER)
Cco05g2654 521 Gene3D Glycosidases 67 388 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2654 Cco-Chr5:34616226 Cco11g0361 Cco-Chr11:3650940 2.60E-136 dispersed
Cco01g1788 Cco-Chr1:30589609 Cco05g2654 Cco-Chr5:34616226 6.20E-162 wgd
Cco05g2654 Cco-Chr5:34616226 Cco06g1785 Cco-Chr6:28244719 4.50E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2654 K07964 - csv:101214214 938.332