Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2658 ATGTTGACAAATTTCATGTCACTGTTCTTAGAAGGTCGTTCGTTTATGGTTCTTGAGTTTTTCGAATCTGAGGATGTGGGTTTAAGGAATGGGAACAAAGGTGCAAGTGGTCAATACTATAATGGAATTCTGCCAAGAGCTACCTCCGATGCATATCTAGGTTGTGATAGAGATGCTGTGAAGAGGACAATGCTTGAGCATGAAGCCACATTCAAGAACCAGGTTCGCGAGCTGCATCGGTTATATATAAAACAGAGAGAGTTAATGAATGATATTAAAAGATCAGAACACAGACACCCGATACCGGTGGACATATCATTCTCATCTAGTCCTCTAGCATCTCAAAGTACTCCTGATGGTGCAAGGAAATGGCATCTCCCAAGCTTTCCTCTTGCAATTTCTTCCAGTGGACCATCTGTACCTGCTGTTGAAGATGTAAAATCATCTTTAAGTTCTTTGAAAGAAAACAATAGAAGTGATGGCCTCTTACCATCCCAAAATGGAACCAGTTCAAAGGACTGTGAGGTACTAGAATCTAGACCCTCAAAGTCTAGGAGGAAAACTTTTGATCTTCAACTTCCAGCAGATGAGTACATTGATAGTGAAGAGGGGGAGGTATTTCAAGATGAAAAAGTGCCTCCCACGTTGGGTTGCCATTCAAATGGTAACAAGAAATTTGAGACTCAGAGTTGTGTGACGGCAAATTTGAATGTGAATCCTAGTGAAAAAAGTGGTGGCCAAAGTGCTGCTTTGAGAACTGACTCACGTTTATGGAACAGATATGGTTTGGCTGACTTGAATGAGCCTGTTCAGGTCGAAGAGGCAAATGGGTCCAATTTTTTTGATCTTCCTAATGCTCGTGACTCCAGCAATGGGGAGACTCAAGGCCCCATTGTATCGTCTACGAAGCAAGAAATTTTTCTGAGCTCCAATAATGAAGGTGGACATGCAACAAATAGGAATTCGTATATTGAGAATGGAAATAGAAGAGAGGCATTTCCTAACATCTTTGAAGCAGGACGTAGTAAGGAAAGTGAGAAATCTATTACTCATGGTCAGATGGAAAAATTCCATTTATCTTCTAATCCTATGCAAGTTCCACTTAACAAGTTTCATGAACTTCCAGTTTTCTATCTCAATGATAAAAGCAAGGTTCAACAAGATTTGGACAGGCCAGTTAGTGATTTGCAATTATCCAAAGGAAGTTATGAAATGTCCAATACTGGGTATCCTGGTTATCTTTTAGCTTCTCAGACATCTCGTACATATCAAATTGCTCCTTCTTTGGACGTGGGCAAGTCTTGGGCTCACTCCAGTTCATCTTGGGAAAAGTCAAATGGCAACAGCTCCCAAAAGACGGCATCAGGTCATACACAGCCGTGTTTCAAATCGTCTGCTGCTGTTCACAAGAGTTTTCCTTCATCAGCTCAGAACAATGGAATTTTTGGAGATAGATGGCATTTGAGTAGTGACTCTAGATCAAACCCTGGGTCTGGTTGTGAAACTCCTTACCAGAATGGATTCTATTTTGGGTCTACGTCTGGTTCCAATGGGGGAATTCTCTCCTCTAGCGTAAGGCATGACCATGGGGCAAACTACTACAAGGGCTCCAGTTTTATTGGCACGAATTCTCCAAAAGACATTAACTTGAATGTAGTGCTCTCAAAAAGCTTATCAAATGAGGCAGGTCAACAACCAAACTACCGGACCAGAGAGGCAGAACAAAACAATGAGGACCATCATAATGTATTACCATGGACAAGGGCTCTACCTGCTAGTAAGAATGAAACGATCAATTCAGGAAGATTCTCTATGACTGCAGAGCTTAATTTTGTTCTCTCACCGAAGAAACAATTTTCTGACAGAAATGAAACTGAAAATGGCAGTAAAGTTATATGTTATCCAAACATCGAGTCTAATTCACATTGTAGTAACATTGAGCCGAGAATGTCTGAACACGGTGAATGCCAGAGTAACCGAAAACTTCTTGGGTTTCCCATTTTTGAAGGGCCACGCATTTCTAAGAATGAGTCATTTTCTCTTACATCCCCGTCAGCACCTCCTAATCCATCTGAGAATGAAGTGGAAGATAACCGGAAAACTAGAGTACTTGATATCAATTTGCCTTGTGATCCTTCAGTTTTTGAGTCAGACAATGCTACTACCGGAGCTCTGGCTGTAGAGAATGGAAAGGACACAAAGATCTCTACTGTGAGAGTTGATATTGATTTGAACTCGTGTGTCAGCGATGATGAACCATCTATGAGACCTCTACCCTTGGCTTCTTCAAGTGGCAAGGAAAAGGTCGTCGTAGAGATAGATTTAGAAGCCCCGGCAATGCCCGAGGCTGAAGACGACATAATTGCAGAAGAAGAATCTTTAGAAAAACAGCATGAACAGCAACCACAATCTCCTCAGCACAAGGCTGTTGATATTCAGGATGATCTTATGGCTTTAGCAGCAGAGGCAATACTTGCCATCTCTTCTTGTGTTCATTCATGTCATTTGGATGATAGTTTTAGCAATGCGTTGGATGATTCTTCAAGCGATCCCCTAAATTGGTTTGCTGAGATAGTTTCCACTCACGGAGATGATGTACAGGCCAAGTCTGACATTGTATTGAGATCCAAAGAAGGCAAGGATGCTGAGGAATCCTCTTTGAGAGGGATTGATTACTTTGAGTACATGACTTTGAGGCTGGCGGAGGTCGGTGAAGAAGACTACATGCCTAAGCCCTTGGTTCCAGAAAATATGGAAATTGAAGATACTGGAACCAATTTGTTGCAAAATCGGCCCCGAAAGGGCCAGACAAGGAGAGGTAGGCAGCGAAGGGACTTCCAGAAGGACATCCTTCCAGGCCTTTCTTCTCTATCAAGGCATGAGGTTACAGAAGATCTTCAGACGTTTGGTGGCCTAATGCGAGCGACGGGCCACTCTTGGCATTCTGGAGTTACAAGGAGGAACTCTACTAGAAATGGTTGTGGAAGAGGAAGACGACGATCTGTGATCAGTCCCCCGCCCCCTGTGCAATCAGCATGTAATCAGCTGATACAGCAACTAAGTAACATTGAAATGGGGCTGGAAGATGGAAGCCTGACTGGTTGGGGCAAGACAACCAGACGGCCCCGTCGGCAAAGATGTCCGGCCGGTAACCCTCCGGCTGTCCCTTTAACTTAA 3177 43.06 MLTNFMSLFLEGRSFMVLEFFESEDVGLRNGNKGASGQYYNGILPRATSDAYLGCDRDAVKRTMLEHEATFKNQVRELHRLYIKQRELMNDIKRSEHRHPIPVDISFSSSPLASQSTPDGARKWHLPSFPLAISSSGPSVPAVEDVKSSLSSLKENNRSDGLLPSQNGTSSKDCEVLESRPSKSRRKTFDLQLPADEYIDSEEGEVFQDEKVPPTLGCHSNGNKKFETQSCVTANLNVNPSEKSGGQSAALRTDSRLWNRYGLADLNEPVQVEEANGSNFFDLPNARDSSNGETQGPIVSSTKQEIFLSSNNEGGHATNRNSYIENGNRREAFPNIFEAGRSKESEKSITHGQMEKFHLSSNPMQVPLNKFHELPVFYLNDKSKVQQDLDRPVSDLQLSKGSYEMSNTGYPGYLLASQTSRTYQIAPSLDVGKSWAHSSSSWEKSNGNSSQKTASGHTQPCFKSSAAVHKSFPSSAQNNGIFGDRWHLSSDSRSNPGSGCETPYQNGFYFGSTSGSNGGILSSSVRHDHGANYYKGSSFIGTNSPKDINLNVVLSKSLSNEAGQQPNYRTREAEQNNEDHHNVLPWTRALPASKNETINSGRFSMTAELNFVLSPKKQFSDRNETENGSKVICYPNIESNSHCSNIEPRMSEHGECQSNRKLLGFPIFEGPRISKNESFSLTSPSAPPNPSENEVEDNRKTRVLDINLPCDPSVFESDNATTGALAVENGKDTKISTVRVDIDLNSCVSDDEPSMRPLPLASSSGKEKVVVEIDLEAPAMPEAEDDIIAEEESLEKQHEQQPQSPQHKAVDIQDDLMALAAEAILAISSCVHSCHLDDSFSNALDDSSSDPLNWFAEIVSTHGDDVQAKSDIVLRSKEGKDAEESSLRGIDYFEYMTLRLAEVGEEDYMPKPLVPENMEIEDTGTNLLQNRPRKGQTRRGRQRRDFQKDILPGLSSLSRHEVTEDLQTFGGLMRATGHSWHSGVTRRNSTRNGCGRGRRRSVISPPPPVQSACNQLIQQLSNIEMGLEDGSLTGWGKTTRRPRRQRCPAGNPPAVPLT 1058
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34630976 34637633 - CcPI632755_05g026580.1 Cco05g2658 180286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2658 1058 MobiDBLite consensus disorder prediction 151 175 - -
Cco05g2658 1058 MobiDBLite consensus disorder prediction 1028 1058 - -
Cco05g2658 1058 MobiDBLite consensus disorder prediction 151 186 - -
Cco05g2658 1058 MobiDBLite consensus disorder prediction 440 460 - -
Cco05g2658 1058 PANTHER TRANSCRIPTION FACTOR, PUTATIVE (DUF863)-RELATED 32 1048 - -
Cco05g2658 1058 MobiDBLite consensus disorder prediction 676 692 - -
Cco05g2658 1058 MobiDBLite consensus disorder prediction 676 697 - -
Cco05g2658 1058 MobiDBLite consensus disorder prediction 979 1009 - -
Cco05g2658 1058 Pfam Plant protein of unknown function (DUF863) 137 1048 IPR008581 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2658 Cco-Chr5:34630976 Cco08g1181 Cco-Chr8:23581166 9.40E-170 dispersed
Cco01g0405 Cco-Chr1:4035704 Cco05g2658 Cco-Chr5:34630976 2.50E-07 transposed
Cco06g1545 Cco-Chr6:25983910 Cco05g2658 Cco-Chr5:34630976 5.50E-06 transposed
Cco01g1791 Cco-Chr1:30617014 Cco05g2658 Cco-Chr5:34630976 3.70E-27 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2658 - - - 0.0