Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2663 ATGGGTGACGATGATGAACAGCCGCCGCCGCCGCCGCCGTCCAAATCTTTGAGACCCACTATTAATCTGCCGCCACGGACTTCTATGGAGTCACTCTTCAGCGGTGGGTCGGGTTTGGGATTTGGGTTTAGCCCAGGACCGATGACCCTCGTCTCGAGCTTCTTCTCTGATTCCGACGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGAGCTATGGCATCGCCGGTGGCTGCCGTTCCTACGTCGGCGTCTGAGTTTAAGGCTTCTACCGGTCTGCTCGAATCTCCGGAGCTTTTCTCGCCTGGTCAAGGACCTTTCGGAATGACTCATCAGCAAGCTTTGGCTCAGGTTACTATGCAGGCTGCAGAAGCCTATTCTCATAATCAAATGCAAGCAGCATCTTTTTCTTCATCAGTAGCACCCTCTGCATCCTCCTCACAGCTTTTGACATCCTTGCCGGTCGAGAAGACTAAAGATGAGCCGAAGCAACCTCCGTTCCAGGACTCTGCAGTTGCATCCAAGGAGCCATCAGATAACTCTCAATCAGAGCAGAGATTGCAATCTTCTTTGTGTAATGTTGATAGGCCTACTGATGATGGATACAATTGGAGAAAATATGGACAGAAACAAGTGAAGGGCAGTGAATTTCCTCGAAGCTACTACAAGTGCACGCACCCGAATTGTCCTGTCAAGAAAAAGGTTGAACGATCTCTGGAAGGACAAGTCACTGAAATTATCTACAAGGGCGAGCACAACCATAAACGACCTCAACCGAATAAACGGGCAAAGGATGTCGGAAATTCTAACGGATATTCGAGTATTCATGGAAATCCTGAGCTATCTTCTCAAGTTCAGAGTGGATATTTGAATAAATTGAATGAGCAGACATCTGTGTCTTCCACTGCAAAGAAGGATCAAGAATTGAGTCATGTTACACACGAGCAGTTGTCAGGTACTAGTGATGGTGAGGGAGGGAGTGAGATAGAAACTGGAGTGAATCGAAAAGATGAAGACGAACCTGATGCCAAGAGACGGAACACTGAGGTTAGAATTTCTGAGCCAGCATCTTCTCATAGAACTCTCACAGAATCCAGAATCATTGTGCAGACTACAAGTGAAGTCGATCTATTAGATGATGGCTACAGGTGGCGTAAGTATGGGCAGAAAATTGTTAAAGGCAACCCTTACCCGAGGAGCTATTATAAATGCACAACTCCAGGATGCAATGTTCGTAAACATGTAGAGAGAGCTTCATCAGACCCGAAAGCTGTCATAACGACCTACGAAGGTAAACACAATCATGATGTTCCAGTTGGTAAAATCAGCAGCCACTGTTCAGTCAACAGTAACAATCCTCAACTAAAATCACAAAATATAGTTACTGAGAAAAAATTTTCAAGTAACAACACTGATACTGGGAACTCTCGTCAACAGCCTGCTGGACTTTTACTGTTAAAGGAAGAACAAATAACATAG 1476 45.8 MGDDDEQPPPPPPSKSLRPTINLPPRTSMESLFSGGSGLGFGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMASPVAAVPTSASEFKASTGLLESPELFSPGQGPFGMTHQQALAQVTMQAAEAYSHNQMQAASFSSSVAPSASSSQLLTSLPVEKTKDEPKQPPFQDSAVASKEPSDNSQSEQRLQSSLCNVDRPTDDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLEGQVTEIIYKGEHNHKRPQPNKRAKDVGNSNGYSSIHGNPELSSQVQSGYLNKLNEQTSVSSTAKKDQELSHVTHEQLSGTSDGEGGSEIETGVNRKDEDEPDAKRRNTEVRISEPASSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKIVKGNPYPRSYYKCTTPGCNVRKHVERASSDPKAVITTYEGKHNHDVPVGKISSHCSVNSNNPQLKSQNIVTEKKFSSNNTDTGNSRQQPAGLLLLKEEQIT 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34686077 34688708 + CcPI632755_05g026630.1 Cco05g2663 180291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2663 491 MobiDBLite consensus disorder prediction 295 362 - -
Cco05g2663 491 SMART WRKY_cls 377 436 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2663 491 SMART WRKY_cls 197 255 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2663 491 MobiDBLite consensus disorder prediction 170 195 - -
Cco05g2663 491 MobiDBLite consensus disorder prediction 465 491 - -
Cco05g2663 491 ProSiteProfiles WRKY domain profile. 372 437 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2663 491 MobiDBLite consensus disorder prediction 465 479 - -
Cco05g2663 491 SUPERFAMILY WRKY DNA-binding domain 369 437 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2663 491 MobiDBLite consensus disorder prediction 312 326 - -
Cco05g2663 491 FunFam WRKY transcription factor 33 364 430 - -
Cco05g2663 491 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 126 461 IPR044810 GO:0003700(InterPro)
Cco05g2663 491 FunFam WRKY transcription factor 182 257 - -
Cco05g2663 491 MobiDBLite consensus disorder prediction 1 19 - -
Cco05g2663 491 Pfam WRKY DNA -binding domain 378 435 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2663 491 Pfam WRKY DNA -binding domain 198 254 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2663 491 Gene3D WRKY domain 362 438 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2663 491 Gene3D WRKY domain 184 257 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2663 491 MobiDBLite consensus disorder prediction 247 281 - -
Cco05g2663 491 MobiDBLite consensus disorder prediction 328 352 - -
Cco05g2663 491 MobiDBLite consensus disorder prediction 262 281 - -
Cco05g2663 491 MobiDBLite consensus disorder prediction 150 208 - -
Cco05g2663 491 SUPERFAMILY WRKY DNA-binding domain 196 256 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2663 491 ProSiteProfiles WRKY domain profile. 198 256 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2663 491 MobiDBLite consensus disorder prediction 20 34 - -
Cco05g2663 491 MobiDBLite consensus disorder prediction 1 35 - -
Cco05g2663 491 MobiDBLite consensus disorder prediction 247 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2663 Cco-Chr5:34686077 Cco10g0387 Cco-Chr10:4528770 5.00E-73 dispersed
Cco02g2053 Cco-Chr2:33476042 Cco05g2663 Cco-Chr5:34686077 1.40E-61 transposed
Cco03g0014 Cco-Chr3:167468 Cco05g2663 Cco-Chr5:34686077 4.40E-68 transposed
Cco03g1071 Cco-Chr3:18674904 Cco05g2663 Cco-Chr5:34686077 1.60E-65 transposed
Cco06g1429 Cco-Chr6:24811197 Cco05g2663 Cco-Chr5:34686077 6.20E-42 transposed
Cco10g2236 Cco-Chr10:35317552 Cco05g2663 Cco-Chr5:34686077 1.70E-65 transposed
Cco11g0470 Cco-Chr11:5016895 Cco05g2663 Cco-Chr5:34686077 2.30E-118 transposed
Cco05g2663 Cco-Chr5:34686077 Cco08g1151 Cco-Chr8:23337040 1.50E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59389 PF03106 WRKY 7.50E-26 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2663 - - - 0.0