Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2670 ATGAGCTTTGAACATTCCGGAACTACCGCCGGTTCGTCGGCGCCGGGGACCACCGGAGGCAGGGGAAACTCCTCGTCGTCATCGGCGTCGGGGACGAGCAAGGAGAAGCAAAAGGAGAAAGCAAGAGTGAGTAGAACGTCAATGATATTGTGGCACGCTCACCAGAATGATTCTGCTGCTGTTCGCAAACTCCTGGAGGAGGATCAATCCCTTGTCCATGCCAGAGATTACGACAGCCGCACTCCTCTTCATGTTGCATCGCTTCATGGTTGGATCGACGTTGCCAAGTGCTTGATTGAACACGGTGCTGATGTTAATGCCCAAGATCGCTGGAAGAACACTCCGCTAGCTGATGCGGAAGGAGCTAAAAAGCATGGCATGATTGAGCTTTTAAAATCATACGGTGGCCTCTCCTATGGCCAAAATGGAAGCCATTTTGAACCAAAGCCTGTTCCTCCTCCCCTGCCGAATAAATGTGACTGGGAAATTGATCCTTCTGAACTGGATTTTTCAAACTCAGCTATTATTGGCAAGGGGTCCTTCGGTGAAATTTTGAAGGCCTATTGGCGTGGAACCCCTGTAGCTGTCAAACGTATTCTTCCATCACTTTCAGATGATAGACTTGTGATTCAGGACTTTCGACATGAGGTTAATCTGTTGGTGAAGCTACGCCACCCTAACATTGTCCAATTTCTTGGAGCTGTCACCGAGAAGAAACCACTTATGCTAATCACTGAATACTTAAGAGGGGGCGATCTTCACCAGTACCTCAAGGACAAAGGTTCGCTCAGTCCTGCAACGGCCATCAATTTTGCACTGGACATCGCCAGGGGAATGGCTTATCTCCACAATGAGCCAAATGTTATAATTCACCGTGATCTAAAACCAAGGAACGTTCTTTTAGTCAATTCTGGTGCAGACCATCTAAAAGTTGGCGATTTTGGTCTAAGCAAACTCATCAAGGTTCAGAATTCACATGATGTTTACAAAATGACTGGCGAGACCGGGAGCTACCGGTACATGGCTCCTGAAGTTTTTAAGCACAGAAAATATGATAAGAAGGTGGATGTGTTTTCTTTTGCGATGATATTATACGAGATGCTTGAGGGAGACCCTCCACTGGCAAATTATGAGCCATATGAAGCTGCCAAGTACGTGGCTGAAGGTCATAGACCGATGTTCCGTGCGAAAGGATACCTTCCTGTTCTGAGAGAGTTAACAGAAGAATGTTGGGCATCTGATATGAACAAGAGACCATCTTTCTTGGAAATTCTCAAAAGACTTGAAAAGCTCGCTTTAGCATCATCATCCCAAACCCCAGTCCCATTTTCCGTGGAGAAATCTTCTCCAGAATGTGGCCGCCTTCAATGTCACTCATAG 1380 46.67 MSFEHSGTTAGSSAPGTTGGRGNSSSSSASGTSKEKQKEKARVSRTSMILWHAHQNDSAAVRKLLEEDQSLVHARDYDSRTPLHVASLHGWIDVAKCLIEHGADVNAQDRWKNTPLADAEGAKKHGMIELLKSYGGLSYGQNGSHFEPKPVPPPLPNKCDWEIDPSELDFSNSAIIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQYLKDKGSLSPATAINFALDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSGADHLKVGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLANYEPYEAAKYVAEGHRPMFRAKGYLPVLRELTEECWASDMNKRPSFLEILKRLEKLALASSSQTPVPFSVEKSSPECGRLQCHS 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34735180 34740831 + CcPI632755_05g026700.1 Cco05g2670 180298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2670 459 FunFam Integrin-linked protein kinase family 249 441 - -
Cco05g2670 459 MobiDBLite consensus disorder prediction 1 44 - -
Cco05g2670 459 Gene3D - 20 144 IPR036770 -
Cco05g2670 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g2670 459 Gene3D Phosphorylase Kinase; domain 1 155 249 - -
Cco05g2670 459 ProSiteProfiles Protein kinase domain profile. 170 431 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2670 459 Pfam Protein tyrosine and serine/threonine kinase 174 428 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g2670 459 CDD STKc_MAP3K-like 176 428 - -
Cco05g2670 459 ProSiteProfiles Ankyrin repeat region circular profile. 78 110 - -
Cco05g2670 459 ProSitePatterns Protein kinases ATP-binding region signature. 176 197 IPR017441 GO:0005524(InterPro)
Cco05g2670 459 PANTHER SERINE-THREONINE PROTEIN KINASE 25 432 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco05g2670 459 SMART serkin_6 170 432 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2670 459 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515(InterPro)
Cco05g2670 459 SMART ANK_2a 78 107 IPR002110 GO:0005515(InterPro)
Cco05g2670 459 FunFam serine/threonine-protein kinase STY46-like 163 249 - -
Cco05g2670 459 Pfam Ankyrin repeats (3 copies) 52 133 IPR002110 GO:0005515(InterPro)
Cco05g2670 459 FunFam serine/threonine-protein kinase STY8 23 144 - -
Cco05g2670 459 SUPERFAMILY Ankyrin repeat 49 136 IPR036770 -
Cco05g2670 459 SUPERFAMILY Protein kinase-like (PK-like) 168 434 IPR011009 -
Cco05g2670 459 PIRSF ILK 2 441 - -
Cco05g2670 459 MobiDBLite consensus disorder prediction 1 32 - -
Cco05g2670 459 Gene3D Transferase(Phosphotransferase) domain 1 250 449 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1958 Cco-Chr2:32505450 Cco05g2670 Cco-Chr5:34735180 7.60E-70 dispersed
Cco05g2670 Cco-Chr5:34735180 Cco09g1497 Cco-Chr9:20461374 8.50E-59 dispersed
Cco05g2670 Cco-Chr5:34735180 Cco03g0718 Cco-Chr3:7372282 6.00E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86880 PF07714 PK_Tyr_Ser-Thr 9.10E-64 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2670 - - - 0.0