Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2672 ATGAAGTTTGGCAAACAATTTGCTGCACAAATGGTTCCAGAATGGCAACAAGCCTACATGGATTACGACTTCCTCAAATCCCTCTTGAAGCAAATTGATACCTTCAACAAAACCCACGCTAAGAACCACCCTACCACTCATTCCGGCCAGCTAAGCAGAACCCTTACTCTCTACAGAGCTTTCAGCGGCCTAACGCTCCGCCACAGCCATAGCCACGGTCACACTCATGCCCATGCCCATAATAGCCACCCAACAAGTCCTGCAGGTTCGCCACAGGAGACGTTGGAGGAGCAGGCGATATTGGTGAATGCGGTGAACCGGGATGGGACGAAGAAGTACCGGACGACGTTTTTGATGGCGGATGAGGAAGGAGGAGAGTATGAGCTTGTGTATTTCAGGTCATTGGATAGGGAATTCAATAAAGTGGACAAGTTTTATAAGTCCAAAGTGGAGGAAGTTGTGAAGGAAGCGAGTGTGTTGAATAAGCAAATGGATGCTTTGATTGCTTTCAGAATCAAAGTGGAGAATCCAGAGGGTGTTTGGGACTTCTCCGGCCACCGCCCGACGGAGGAGATTACAAGACTGGCCTCTGATATTGCTGTTTCTACGGCTGCTTTGTCATCTTCCACGCCTTCTGGTGTCAGAGCTAGCAGAAGGGTTCATATAGCGATGGATTCCATAGAAGAAGGGTCGAGCCACAATGAGCATAGTAGTCGTAAACCAAACAATGAATCATCAAAAGATGATAGTAAAGATGAAGATGAAGAGAAGAAATCAAAGGGTGAAGATAATGAAGGGAAGGCAAGAAAAATGAAGGCCAATAGACCACCTCCACTTGAACTTCTTGATCGTGTAACAATGAATACAACTCTGGAGACCCCAAGATCCACCATTAAAGGCCTTCTCAATTTTCCCAAAAATTCAGAACTCCAATTCAACAAAGAAAATCTCTACAAAATTGAGAACCAACTCAAAAAGGCTTTTGTTGTGTTTTATCACAAGCTTAGGCTACTCAAGAGCTTCAGCTTCTTGAATACTTTGGCATTTTCAAAGATAATGAAGAAATATGATAAGATTACATCAAGAGATGCAGGAAAGTCATATATGAAGATGGTGGACAGCTCTTATCTTGGGAGTTCTGATGAGGTTTCCAAGTTAATGGAGAGGGTGGAAGCTGCATTTATCAAACATTTCTGCAATGCTAATCGCACCAAAGGAATGAACATCTTGAGACCCAAAGCAAAGAAAGAAAGACATAGAATTACATTTTCAGTTGGTTTCTTTGCTGGTTGCACCATAGCTCTTGTTGTCGCCCTCATTTTTATTACACGAGCCCGACATATACTAGACGGAGAAGGCAGCTCCCAGTATATGGAAACCATGTTTCCTCTTTACAGCTTGTTTGGATTTGTCGTCTTGCACCTGCTAATGTATGCAGCAAACATATACTTTTGGAGGCGATATCAAGTAAATTACTCCTTCATATTTGGTTTCAAGCAAGGCACTGAATTGGCCTATCGAGAGGTTCTTCTTCCCAGTTTTGCTGTGGCAACTCTTGCTTTAGCCTGTGTTCTTTCTAATCTTGACATGGAGATGGACCCTGTAACAAAGTCATATCAAGCAGTGACTGAACTTCTCCCTTTAGTTTTGCTCCTTGTTGTGATTGCTGTCTTCTTATGTCCACTCAACATCTTATATCGCTCAAGTCGCTTCTTCTGCATAAGAACTTTGTACCATTGCATATGTGCTCCTCTCTACACGGTCATCTTCCCCGATTTCTTCTTGGCAGATCAGTTAACCAGCCAGGTACAAGCACTTCGTAGCTTGGAATTCTACATTTGCTATTATGGTTGGGGAGATTACAAACATCGACAGAATACTTGTAGATCCAACACTGTATTCAACACTTTCAGCTTTATCATTGCTGTTATTCCATATTGGTCGCGTCTCCTTCAGTGTCTCAGGCGACTGTATGAGGAGAAAGACGCAATGCAGGGATACAACGGGATCAAATACTTCTTGACAATTGTAGCTGTTTGCTTAAGGACAGCTTACAATCTGAACGGGGGAATAACCTGGAAGGTGCTAGCCGCAGTTTTGTCAGCTGTTGCTGCCATTATATGCACATATTGGGACATTGCCATCGATTGGGGCCTTCTGCAGCGCCATTCGAAAAACCGATGGTTGAGAGACAAGCTACTTGTTGGTCACAATAGTGTATACTATGTGGCAATGGTCTTGAATGTTTTGCTGAGGTTTGCTTGGCTGCAAACTGTGTTGGATTTCCAGTTCTCCTTCCTGCATACACAAGGTTTGATTACAATAGTGGCCAGCCTTGAGATCATTCGTCGTGGCATATGGAATTTCTTCAGGTTGGAGAATGAGCATCTGAACAATGTTGGGAAGTATCGTGCATTCAAATCTGTACCGCTGCCTTTCAACTATGATGAAGATGATGACAAAGATGATTAA 2472 43.24 MKFGKQFAAQMVPEWQQAYMDYDFLKSLLKQIDTFNKTHAKNHPTTHSGQLSRTLTLYRAFSGLTLRHSHSHGHTHAHAHNSHPTSPAGSPQETLEEQAILVNAVNRDGTKKYRTTFLMADEEGGEYELVYFRSLDREFNKVDKFYKSKVEEVVKEASVLNKQMDALIAFRIKVENPEGVWDFSGHRPTEEITRLASDIAVSTAALSSSTPSGVRASRRVHIAMDSIEEGSSHNEHSSRKPNNESSKDDSKDEDEEKKSKGEDNEGKARKMKANRPPPLELLDRVTMNTTLETPRSTIKGLLNFPKNSELQFNKENLYKIENQLKKAFVVFYHKLRLLKSFSFLNTLAFSKIMKKYDKITSRDAGKSYMKMVDSSYLGSSDEVSKLMERVEAAFIKHFCNANRTKGMNILRPKAKKERHRITFSVGFFAGCTIALVVALIFITRARHILDGEGSSQYMETMFPLYSLFGFVVLHLLMYAANIYFWRRYQVNYSFIFGFKQGTELAYREVLLPSFAVATLALACVLSNLDMEMDPVTKSYQAVTELLPLVLLLVVIAVFLCPLNILYRSSRFFCIRTLYHCICAPLYTVIFPDFFLADQLTSQVQALRSLEFYICYYGWGDYKHRQNTCRSNTVFNTFSFIIAVIPYWSRLLQCLRRLYEEKDAMQGYNGIKYFLTIVAVCLRTAYNLNGGITWKVLAAVLSAVAAIICTYWDIAIDWGLLQRHSKNRWLRDKLLVGHNSVYYVAMVLNVLLRFAWLQTVLDFQFSFLHTQGLITIVASLEIIRRGIWNFFRLENEHLNNVGKYRAFKSVPLPFNYDEDDDKDD 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34757863 34763792 + CcPI632755_05g026720.1 Cco05g2672 180300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2672 823 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 821 - GO:0000822(PANTHER)|GO:0005737(PANTHER)|GO:0005794(PANTHER)|GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0006817(PANTHER)|GO:0015114(PANTHER)|GO:0016036(PANTHER)
Cco05g2672 823 Pfam SPX domain 1 372 IPR004331 -
Cco05g2672 823 MobiDBLite consensus disorder prediction 226 277 - -
Cco05g2672 823 Pfam EXS family 461 797 IPR004342 GO:0016020(InterPro)
Cco05g2672 823 CDD SPX_PHO1_like 2 366 IPR034092 -
Cco05g2672 823 ProSiteProfiles EXS domain profile. 629 823 IPR004342 GO:0016020(InterPro)
Cco05g2672 823 MobiDBLite consensus disorder prediction 69 93 - -
Cco05g2672 823 ProSiteProfiles SPX domain profile. 1 370 IPR004331 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2672 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2672 Cco-Chr5:34757863 Cco09g2010 Cco-Chr9:34309323 6.10E-233 dispersed
Cco05g2672 Cco-Chr5:34757863 Cco05g2674 Cco-Chr5:34768376 4.90E-190 proximal
Cco05g0476 Cco-Chr5:3831350 Cco05g2672 Cco-Chr5:34757863 6.00E-110 transposed
Cco05g2586 Cco-Chr5:34114391 Cco05g2672 Cco-Chr5:34757863 2.70E-116 transposed
Cco09g2391 Cco-Chr9:38089833 Cco05g2672 Cco-Chr5:34757863 6.0e-310 transposed
Cco05g2672 Cco-Chr5:34757863 Cco09g2009 Cco-Chr9:34291458 1.70E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g964 . . . . . . . . . Cmo18g01150 . Cma18g01128 . Car18g01042 Sed06g1507 . . Bhi07g01530 Tan04g1051 Cmetu06g0752 Lac13g0343 Hepe10g1767 . . Cla05g02420 Cam05g2601 Cec05g2632 Cco05g2672 Clacu05g2602 Cmu05g2456 Cre05g2572 . . . . Lsi04g00392 . Chy10g01029 Cme10g00389 . . . . . . . . . . . . . . Car15g00256 Cpe13g00964 . . . . . . . . . . . . . . . . . Chy09g00228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193