Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2677 ATGACGAGAGCTTTTCGAAGACGGACTTCGTATTCAAGGCCTACAGATCGCCTCCGATTCCAGGCATCGGCGGACGGTGCTACGAAATCTGGATTCATCAGAGATATGAAGCTGAAGGAGATCTTGACTACTTTGCTTATAGGCCTTCCCTTGGTTGTTTTTGTTGTTTTGGTTCTTAGGAATCCAGCGGTGGATCTCTCTCTGGGTTTTGCCGAAGCCAGAGCATTGGGAAGAGTGGCCACTAATGGCGGTTCTGAGAGTTCAGGTTCAGAAAACAGTTTCTCTCGACTTTCCAATAGAGACAAACTTATTGGAGGTCTTCTCCTTCCTGGATTTGATGAAGGATCATGCTTAAGCAGATATCAATCCAGTTTATATCGAAGAACTTCAACCCACAAACCTTCTCCTTACCTCCTCTCGAAGCTTAGAGACTACGAAGCACTTCATCGACAGTGTGGTCCCCATACGAAACCATACGATGAAGCAGTAGAGCAACTCAGATTTGGCAGTAGTGTTAGTTTGTCAGAGTGTAAATATGTTGTTTGGATATCTTATAGTGGCTTGGGAAACAAGATACTCACTTTGGCTTCTGCATTTCTTTATGCCCTCCTTACCAATCGTGTCTTGCTTGTTGATCCAGGGAAGGATATGGCTGATCTATTTTGTGAGCCTTTCCCAGAAAAATCTTGGTTGCTACCAAATGACTTCCCCTTGGTGGATCAATTCAGCCATTTTGATTCGAAATTTCCTAATTGTCATGGAAATATGCTTAAGATGAACACTCTAAACATGTCAACAGAATCACTCCCATCCTATCTGTACCTACATTTGGTCCATGATTATGATGATCATGACAAGCTCTTCTTCTGTGATCAAGAACAGGCTCTTTTGGGCAGGATCCCTTGGCTAATAGTCAAGACAGATAACTACTTTGTTCCATCTCTCTTCTTGATCCCATCGTTTGAGCACGAACTCAGTAACTTGTTCCCCCAAAAAGACACCGTCTTCCATCATCTGGGCCGGTATCTTTTCCACCCATCGAATCATGTTTGGGGACTAATAACGAGATACTACGAAGCATATCTATCAAGTGCTGATGAAAGAATAGGAATTCAAGTAAGAGTGTTCGAGAGTGAACCGGGGCCATTTGAACATATAATGGATCAGATTTTAGGCTGTACTCTTAAGGAGAAGTTACTGCCTGAGCTAGACAAGGAAGGCTTCTCTTCTGTTCCTTTGGAACGCCCAAGTGTAAAAGCTGTTTTGATGACATCTTTAAGTTCTGGATATTATGAAAAATTGAGAAGCTTGTACTGGGAATACCCGACCACAAGTGGAGAGGTCATTGCAGTTTATCAGCCGAGCTACGAAATGTATCAGCAGACAGAGAAGAAGACTCACAATAGGAAAGCATGGGCAGAAATGTACCTTCTGAGTTTGAGCGATGTGTTGGTGACCAGTGCATGGTCAACATTCGGGTATGTGGCTCAAGGACTCGGCGGATCGAAGCCATGGATTCTTTACAAGGCTGAGAACATGACCACGCCCGATCCACCATGTCGTAGGGCAATGTCAATGGAGCCTTGCTTTCATGCTCCTCCATTCTATGACTGCAAGGCAAAGAAAGGAATAGATACTGGTGAAGTTGTTCCACATGTAAGACATTGTGAAGACATGAACTGGGGGCTTAAGCTTGTTCACCATGAGGATTTATAA 1716 43.71 MTRAFRRRTSYSRPTDRLRFQASADGATKSGFIRDMKLKEILTTLLIGLPLVVFVVLVLRNPAVDLSLGFAEARALGRVATNGGSESSGSENSFSRLSNRDKLIGGLLLPGFDEGSCLSRYQSSLYRRTSTHKPSPYLLSKLRDYEALHRQCGPHTKPYDEAVEQLRFGSSVSLSECKYVVWISYSGLGNKILTLASAFLYALLTNRVLLVDPGKDMADLFCEPFPEKSWLLPNDFPLVDQFSHFDSKFPNCHGNMLKMNTLNMSTESLPSYLYLHLVHDYDDHDKLFFCDQEQALLGRIPWLIVKTDNYFVPSLFLIPSFEHELSNLFPQKDTVFHHLGRYLFHPSNHVWGLITRYYEAYLSSADERIGIQVRVFESEPGPFEHIMDQILGCTLKEKLLPELDKEGFSSVPLERPSVKAVLMTSLSSGYYEKLRSLYWEYPTTSGEVIAVYQPSYEMYQQTEKKTHNRKAWAEMYLLSLSDVLVTSAWSTFGYVAQGLGGSKPWILYKAENMTTPDPPCRRAMSMEPCFHAPPFYDCKAKKGIDTGEVVPHVRHCEDMNWGLKLVHHEDL 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34780307 34782787 + CcPI632755_05g026770.1 Cco05g2677 180305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2677 571 Gene3D - 174 225 - -
Cco05g2677 571 Pfam Xyloglucan fucosyltransferase 98 539 IPR004938 GO:0008107(InterPro)|GO:0016020(InterPro)|GO:0042546(InterPro)
Cco05g2677 571 FunFam Galactoside 2-alpha-L-fucosyltransferase 175 226 - -
Cco05g2677 571 PANTHER FUCOSYLTRANSFERASE 2-RELATED 40 568 IPR004938 GO:0005794(PANTHER)|GO:0008107(InterPro)|GO:0009969(PANTHER)|GO:0016020(InterPro)|GO:0042546(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2677 K13681 - - csv:101216541 1035.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1152 Cco-Chr7:25233045 Cco05g2677 Cco-Chr5:34780307 3.60E-157 transposed
Cco01g1800 Cco-Chr1:30687078 Cco05g2677 Cco-Chr5:34780307 1.30E-197 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g2677 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.3 3.2e-158 555.4
Cco01g1800 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 2.2e-151 532.7
Cco05g2677 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 1.5e-165 579.7
Cco01g1800 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.3 7.8e-162 567.4
Cco07g1152 . 61 548 Xyloglucan Fucosyltransferase1 AT1G14100 50.1 2.2e-140 496.1
Cco05g2677 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.9 8.6e-139 490.7
Cco01g1800 . 106 585 Xyloglucan Fucosyltransferase1 AT1G14110 51.4 2.4e-133 472.6
Cco02g0650 . 1 505 Xyloglucan Fucosyltransferase1 AT1G49710 65.0 2.5e-192 668.7
Cco05g1171 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 61.9 5.2e-182 634.4
Cco08g1013 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.3 3.3e-168 588.2
Cco05g2677 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.5 1.4e-180 629.8
Cco01g1800 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 60.2 2.5e-169 592.4
Cco07g1152 . 67 548 Xyloglucan Fucosyltransferase1 AT2G03210 50.4 4.3e-137 485.3
Cco05g2677 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.2 5.4e-201 697.6
Cco01g1800 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.4 1.1e-188 656.8
Cco07g1152 . 55 548 Xyloglucan Fucosyltransferase1 AT2G03220 52.6 5.5e-153 538.1
Cco05g2677 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.7 1.9e-155 546.2
Cco01g1800 . 95 584 Xyloglucan Fucosyltransferase1 AT2G15350 50.5 3.0e-145 512.3
Cco05g2677 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.4 1.6e-149 526.6
Cco01g1800 . 106 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.5 1.5e-139 493.4
Cco05g2677 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 55.1 1.1e-153 540.4
Cco01g1800 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.7 2.2e-143 506.1
Cco02g0650 . 1 505 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 1.7e-190 662.5
Cco05g1171 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 4.9e-185 644.4
Cco05g2677 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.5 1.4e-180 629.8
Cco01g1800 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 60.2 2.5e-169 592.4
Cco07g1152 . 67 548 Xyloglucan Fucosyltransferase1 AT2G03210 50.4 4.3e-137 485.3
Cco05g2677 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.2 5.4e-201 697.6
Cco01g1800 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.4 1.1e-188 656.8
Cco07g1152 . 55 548 Xyloglucan Fucosyltransferase1 AT2G03220 52.6 5.5e-153 538.1
Cco05g2677 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.5 1.4e-180 629.8
Cco01g1800 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 60.2 2.5e-169 592.4
Cco07g1152 . 67 548 Xyloglucan Fucosyltransferase1 AT2G03210 50.4 4.3e-137 485.3
Cco05g2677 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 55.1 1.1e-153 540.4
Cco01g1800 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.7 2.2e-143 506.1
Cco05g2677 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.4 1.6e-149 526.6
Cco01g1800 . 106 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.5 1.5e-139 493.4
Cco05g2677 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.3 3.2e-158 555.4
Cco01g1800 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 2.2e-151 532.7
Cco05g2677 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 1.5e-165 579.7
Cco01g1800 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.3 7.8e-162 567.4
Cco07g1152 . 61 548 Xyloglucan Fucosyltransferase1 AT1G14100 50.1 2.2e-140 496.1
Cco05g2677 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.9 8.6e-139 490.7
Cco01g1800 . 106 585 Xyloglucan Fucosyltransferase1 AT1G14110 51.4 2.4e-133 472.6
Cco05g2677 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.7 1.9e-155 546.2
Cco01g1800 . 95 584 Xyloglucan Fucosyltransferase1 AT2G15350 50.5 3.0e-145 512.3
Cco02g0650 . 1 505 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 1.7e-190 662.5
Cco05g1171 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 4.9e-185 644.4
Cco02g0650 . 1 505 Xyloglucan Fucosyltransferase1 AT1G49710 65.0 2.5e-192 668.7
Cco05g1171 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 61.9 5.2e-182 634.4
Cco08g1013 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.3 3.3e-168 588.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009001 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 1 1 33