Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2677 ATGACGAGAGCTTTTCGAAGACGGACTTCGTATTCAAGGCCTACAGATCGCCTCCGATTCCAGGCATCGGCGGACGGTGCTACGAAATCTGGATTCATCAGAGATATGAAGCTGAAGGAGATCTTGACTACTTTGCTTATAGGCCTTCCCTTGGTTGTTTTTGTTGTTTTGGTTCTTAGGAATCCAGCGGTGGATCTCTCTCTGGGTTTTGCCGAAGCCAGAGCATTGGGAAGAGTGGCCACTAATGGCGGTTCTGAGAGTTCAGGTTCAGAAAACAGTTTCTCTCGACTTTCCAATAGAGACAAACTTATTGGAGGTCTTCTCCTTCCTGGATTTGATGAAGGATCATGCTTAAGCAGATATCAATCCAGTTTATATCGAAGAACTTCAACCCACAAACCTTCTCCTTACCTCCTCTCGAAGCTTAGAGACTACGAAGCACTTCATCGACAGTGTGGTCCCCATACGAAACCATACGATGAAGCAGTAGAGCAACTCAGATTTGGCAGTAGTGTTAGTTTGTCAGAGTGTAAATATGTTGTTTGGATATCTTATAGTGGCTTGGGAAACAAGATACTCACTTTGGCTTCTGCATTTCTTTATGCCCTCCTTACCAATCGTGTCTTGCTTGTTGATCCAGGGAAGGATATGGCTGATCTATTTTGTGAGCCTTTCCCAGAAAAATCTTGGTTGCTACCAAATGACTTCCCCTTGGTGGATCAATTCAGCCATTTTGATTCGAAATTTCCTAATTGTCATGGAAATATGCTTAAGATGAACACTCTAAACATGTCAACAGAATCACTCCCATCCTATCTGTACCTACATTTGGTCCATGATTATGATGATCATGACAAGCTCTTCTTCTGTGATCAAGAACAGGCTCTTTTGGGCAGGATCCCTTGGCTAATAGTCAAGACAGATAACTACTTTGTTCCATCTCTCTTCTTGATCCCATCGTTTGAGCACGAACTCAGTAACTTGTTCCCCCAAAAAGACACCGTCTTCCATCATCTGGGCCGGTATCTTTTCCACCCATCGAATCATGTTTGGGGACTAATAACGAGATACTACGAAGCATATCTATCAAGTGCTGATGAAAGAATAGGAATTCAAGTAAGAGTGTTCGAGAGTGAACCGGGGCCATTTGAACATATAATGGATCAGATTTTAGGCTGTACTCTTAAGGAGAAGTTACTGCCTGAGCTAGACAAGGAAGGCTTCTCTTCTGTTCCTTTGGAACGCCCAAGTGTAAAAGCTGTTTTGATGACATCTTTAAGTTCTGGATATTATGAAAAATTGAGAAGCTTGTACTGGGAATACCCGACCACAAGTGGAGAGGTCATTGCAGTTTATCAGCCGAGCTACGAAATGTATCAGCAGACAGAGAAGAAGACTCACAATAGGAAAGCATGGGCAGAAATGTACCTTCTGAGTTTGAGCGATGTGTTGGTGACCAGTGCATGGTCAACATTCGGGTATGTGGCTCAAGGACTCGGCGGATCGAAGCCATGGATTCTTTACAAGGCTGAGAACATGACCACGCCCGATCCACCATGTCGTAGGGCAATGTCAATGGAGCCTTGCTTTCATGCTCCTCCATTCTATGACTGCAAGGCAAAGAAAGGAATAGATACTGGTGAAGTTGTTCCACATGTAAGACATTGTGAAGACATGAACTGGGGGCTTAAGCTTGTTCACCATGAGGATTTATAA 1716 43.71 MTRAFRRRTSYSRPTDRLRFQASADGATKSGFIRDMKLKEILTTLLIGLPLVVFVVLVLRNPAVDLSLGFAEARALGRVATNGGSESSGSENSFSRLSNRDKLIGGLLLPGFDEGSCLSRYQSSLYRRTSTHKPSPYLLSKLRDYEALHRQCGPHTKPYDEAVEQLRFGSSVSLSECKYVVWISYSGLGNKILTLASAFLYALLTNRVLLVDPGKDMADLFCEPFPEKSWLLPNDFPLVDQFSHFDSKFPNCHGNMLKMNTLNMSTESLPSYLYLHLVHDYDDHDKLFFCDQEQALLGRIPWLIVKTDNYFVPSLFLIPSFEHELSNLFPQKDTVFHHLGRYLFHPSNHVWGLITRYYEAYLSSADERIGIQVRVFESEPGPFEHIMDQILGCTLKEKLLPELDKEGFSSVPLERPSVKAVLMTSLSSGYYEKLRSLYWEYPTTSGEVIAVYQPSYEMYQQTEKKTHNRKAWAEMYLLSLSDVLVTSAWSTFGYVAQGLGGSKPWILYKAENMTTPDPPCRRAMSMEPCFHAPPFYDCKAKKGIDTGEVVPHVRHCEDMNWGLKLVHHEDL 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34780307 34782787 + CcPI632755_05g026770.1 Cco05g2677 180305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2677 571 Gene3D - 174 225 - -
Cco05g2677 571 Pfam Xyloglucan fucosyltransferase 98 539 IPR004938 GO:0008107(InterPro)|GO:0016020(InterPro)|GO:0042546(InterPro)
Cco05g2677 571 FunFam Galactoside 2-alpha-L-fucosyltransferase 175 226 - -
Cco05g2677 571 PANTHER FUCOSYLTRANSFERASE 2-RELATED 40 568 IPR004938 GO:0005794(PANTHER)|GO:0008107(InterPro)|GO:0009969(PANTHER)|GO:0016020(InterPro)|GO:0042546(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1152 Cco-Chr7:25233045 Cco05g2677 Cco-Chr5:34780307 3.60E-157 transposed
Cco01g1800 Cco-Chr1:30687078 Cco05g2677 Cco-Chr5:34780307 1.30E-197 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2677 K13681 - csv:101216541 1035.79