Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2686 AGCCTTTTTCCCTCCCTCTCAGAATTTCTATATATTGTCCCCTCAACTCTCCTTATTTCTCACTCCTCTGCTTCTTTCTGTTCCTTCATTTCTTACTTCTTTCCTTCTGGAATGGCTTCCGTCCTTATCTTTTTGGCAGGTTTCTATGCCATAGTTTCCTCTGTTGATGCTTATGCAGGTGGAGGCTGGACTGGGGCTCACGCCACCTTCTATGGTGGGAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGCAACTTATACAGCCAAGGATATGGAACAAACACTGCTGCTTTGAGTACGGCTCTATTCAACAATGGCTTGAGCTGTGGCTCTTGCTACGAGATTAGGTGCGCCAGTGACCCTAAATGGTGCTTGCCAGGCTCCATTGTGGTCACAGCCACCAATTTCTGCCCTCCAAACAATGCCCTTCCCAACAACGCTGGAGGCTGGTGCAACCCTCCTCTTCAACACTTTGATCTCTCTCAACCTGTATTCCAACACATTGCTCAGTACAGAGCAGGAATTGTGCCTGTTGCTTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGCATAAGGTTCACCATCAATGGGCACTCCTACTTCAACTTAGTCCTCATCACAAACGTGGGTGGTGCTGGTGATGTACACGCAGTTTCCATCAAAGGATCAAGAACTGGTTGGCAAGCAATGTCAAGGAACTGGGGACAGAACTGGCAGAGTAACAGCTACCTCAATGGTCAAAGCCTCTCCTTCAAGGTAACCACCAGCGACGGCCGAACCGTCATCTCCAACAACGCTGTCCCAGCTGGCTGGTCCTTTGGACAGACTTACAGTGGTGCCCAATTCTGA 858 49.88 SLFPSLSEFLYIVPSTLLISHSSASFCSFISYFFPSGMASVLIFLAGFYAIVSSVDAYAGGGWTGAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQHIAQYRAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVISNNAVPAGWSFGQTYSGAQF 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34845054 34846283 + CcPI632755_05g026860.1 Cco05g2686 180314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2686 285 PRINTS Expansin signature 168 181 IPR002963 GO:0009664(InterPro)
Cco05g2686 285 PRINTS Expansin signature 204 225 IPR002963 GO:0009664(InterPro)
Cco05g2686 285 PRINTS Expansin signature 239 260 IPR002963 GO:0009664(InterPro)
Cco05g2686 285 PRINTS Expansin signature 268 284 IPR002963 GO:0009664(InterPro)
Cco05g2686 285 PRINTS Expansin signature 151 168 IPR002963 GO:0009664(InterPro)
Cco05g2686 285 PRINTS Expansin signature 93 107 IPR002963 GO:0009664(InterPro)
Cco05g2686 285 PRINTS Expansin signature 192 204 IPR002963 GO:0009664(InterPro)
Cco05g2686 285 PRINTS Expansin signature 132 142 IPR002963 GO:0009664(InterPro)
Cco05g2686 285 PRINTS Expansin signature 120 131 IPR002963 GO:0009664(InterPro)
Cco05g2686 285 Gene3D - 50 189 IPR036908 -
Cco05g2686 285 Pfam Expansin C-terminal domain 194 271 IPR007117 -
Cco05g2686 285 FunFam Expansin 52 189 - -
Cco05g2686 285 PRINTS Expansin/Lol pI family signature 176 192 IPR007118 GO:0005576(InterPro)
Cco05g2686 285 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576(InterPro)
Cco05g2686 285 PRINTS Expansin/Lol pI family signature 268 282 IPR007118 GO:0005576(InterPro)
Cco05g2686 285 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576(InterPro)
Cco05g2686 285 PRINTS Expansin/Lol pI family signature 102 120 IPR007118 GO:0005576(InterPro)
Cco05g2686 285 PRINTS Expansin/Lol pI family signature 62 77 IPR007118 GO:0005576(InterPro)
Cco05g2686 285 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 203 282 IPR007117 -
Cco05g2686 285 Gene3D - 193 285 IPR036749 -
Cco05g2686 285 PANTHER EXPANSIN-A15 46 285 IPR002963 GO:0009664(InterPro)
Cco05g2686 285 SMART dpbb_1 98 183 IPR007112 -
Cco05g2686 285 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 81 193 IPR007112 -
Cco05g2686 285 CDD DPBB_EXPA_N 62 188 - -
Cco05g2686 285 SUPERFAMILY Barwin-like endoglucanases 62 211 IPR036908 -
Cco05g2686 285 SUPERFAMILY PHL pollen allergen 190 281 IPR036749 -
Cco05g2686 285 FunFam Expansin 193 285 - -
Cco05g2686 285 Pfam Lytic transglycolase 98 183 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2145 Cco-Chr2:34230991 Cco05g2686 Cco-Chr5:34845054 7.00E-103 dispersed
Cco05g2686 Cco-Chr5:34845054 Cco11g0583 Cco-Chr11:6253081 7.00E-112 dispersed
Cco08g1595 Cco-Chr8:27509100 Cco05g2686 Cco-Chr5:34845054 4.40E-97 transposed
Cco11g0985 Cco-Chr11:16321521 Cco05g2686 Cco-Chr5:34845054 7.50E-121 transposed
Cco01g1803 Cco-Chr1:30718981 Cco05g2686 Cco-Chr5:34845054 1.80E-92 wgd
Cco05g2686 Cco-Chr5:34845054 Cco06g1813 Cco-Chr6:28495715 1.60E-116 wgd
Cco05g2686 Cco-Chr5:34845054 Cco09g2019 Cco-Chr9:34423639 1.70E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2686 - - - 0.0