Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2691 ATGGCTGAAGTTGAAATTGGAGATCCAATCATAAAGTTGTTTGGGAAGACCATTGCTTTGCCACTGAACCATCTGGATTTACCTTCTGATTCCAAATTTCTTTCTTCAGAAACCTCTGTACTTAAAGCTGGCGAAAAGGAAACTTCATGTGAAGAATTGGCAACAGAAAAACGAGGGATTAGCAGTGGAAACCAAATCACCGATCAAACAACATCAGGCATGAGTGAGAACCCATCAGAAGAAAGAGAAATTTCATCTCCAAAAGCTTCCCAAAATGAAGAACAGAGTGAAACAAGTATCTCCCCGGACAACAAAACCTCAAAAAAACCAGACAAAATTCTTCCTTGCCCTCGATGTAACAGCATGGACACTAAATTCTGTTACTACAACAACTACAATGTCAATCAACCTCGTCATTTTTGCAAGAATTGCCAAAGATATTGGACTGCTGGTGGGACCATGAGGAACGTTCCAGTCGGTGCCGGCCGGCGGAAGAACAAAAGCTCCTCATCTTCACATTTTCGTCAGCTAATAATTCCCGACGGTGGAATTCATCGCCATCAATTTCTAGGGAACAATGGAACCTTTCTCACTTTCACCTCAGATTCTTCCATTTCCGACTCACAGAACTGTAAACCAAGTAGGTTTCTCATTAGTACAGAAAATGGAGATGATCATGCCAGTAAATCTTCAATTACAGCTTCAAATTCGTCGGAGAAAGATGGTAAAATGATCTCACAGCAATCAGTAGTGAAAAACTTTTTGCCTTTTCCACCTCAATTACAGACATTTACAGGACTTTCATGGCCTTATTCTTCAATGGCTCCACTGCCGTACTACCCGCCGGCGTTTCCGTTGTCGTATTACCCTGCACTGCCGTACTGGGGCTGCACAGCGCCGCCGTCTTGGAAAGTAATTAATCACAACGGTCAAAATTCGTTTACTAATTCCTCTGTTTTGGGGAAACGTTTAAGAGATGGGAAATTGGTTAGAAGTCCAGCAAATTCAGAGTGTGAAGAGATTGTTAAACAGAGGAATTGTGAAGAACCCTGTTTCTGGAATCCAAAGACAATAAAAGTGGATGATCCAAATGAAGCTGCAAAGAGTTGTATATGGTCAACACTTGGAATTAAGAATGAAAAAGCTGGTGCAAGTACAATCAGTGGAGGTAGCCTTTTTGTCTCTTTACAACAATCTGCAAAGGGAAAAGAAGAAAACCACATTGAAAGTTGTTCGCTTTTACAGGCAAATCCAGCTGCTTTTTCTCGGGCTTTGAAATTCCGTGAGATTGCTTAG 1296 41.44 MAEVEIGDPIIKLFGKTIALPLNHLDLPSDSKFLSSETSVLKAGEKETSCEELATEKRGISSGNQITDQTTSGMSENPSEEREISSPKASQNEEQSETSISPDNKTSKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSSSHFRQLIIPDGGIHRHQFLGNNGTFLTFTSDSSISDSQNCKPSRFLISTENGDDHASKSSITASNSSEKDGKMISQQSVVKNFLPFPPQLQTFTGLSWPYSSMAPLPYYPPAFPLSYYPALPYWGCTAPPSWKVINHNGQNSFTNSSVLGKRLRDGKLVRSPANSECEEIVKQRNCEEPCFWNPKTIKVDDPNEAAKSCIWSTLGIKNEKAGASTISGGSLFVSLQQSAKGKEENHIESCSLLQANPAAFSRALKFREIA 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34867048 34868568 - CcPI632755_05g026910.1 Cco05g2691 180319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2691 431 MobiDBLite consensus disorder prediction 219 241 - -
Cco05g2691 431 ProSitePatterns Zinc finger Dof-type signature. 116 152 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco05g2691 431 MobiDBLite consensus disorder prediction 29 43 - -
Cco05g2691 431 MobiDBLite consensus disorder prediction 89 103 - -
Cco05g2691 431 MobiDBLite consensus disorder prediction 58 80 - -
Cco05g2691 431 PANTHER CYCLIC DOF FACTOR 2 6 429 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2691 431 MobiDBLite consensus disorder prediction 27 114 - -
Cco05g2691 431 ProSiteProfiles Zinc finger Dof-type profile. 114 168 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco05g2691 431 Pfam Dof domain, zinc finger 112 168 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2691 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2691 Cco-Chr5:34867048 Cco10g1583 Cco-Chr10:29078686 1.20E-43 dispersed
Cco01g1810 Cco-Chr1:30753520 Cco05g2691 Cco-Chr5:34867048 2.00E-70 wgd
Cco10g1513 Cco-Chr10:28324957 Cco05g2691 Cco-Chr5:34867048 9.20E-70 wgd
Cco05g2691 Cco-Chr5:34867048 Cco06g1816 Cco-Chr6:28508718 4.60E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g924 . . . . . Bpe10g00878 Bma14g01650 Bma15g00151 Cmo04g01744 Cmo18g01164 . Cma18g01146 . Car18g01055 Sed06g1520 Cpe09g00184 Cpe01g01472 Bhi07g01554 Tan04g1071 Cmetu10g1699 Lac13g0326 Hepe10g1750 . . Cla05g02435 Cam05g2620 Cec05g2653 Cco05g2691 Clacu05g2622 Cmu05g2476 Cre05g2589 . . . . Lsi04g00411 Csa05g02462 Chy10g01010 Cme10g00408 Blo06g00909 Blo11g00777 Bda07g01470 . . . . . . . . Cma04g01665 . Car04g01704 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007008 2 1 2 2 1 1 2 1 1 1 1 1 2 1 0 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59395 PF02701 zf-Dof 1.70E-32 No_clan Cco TF