Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2702 ATGGAAGAGAAACAAAGCGATGTGGTGTTGTTTGGAACGTGGTATAGTTCATACTGCACTAGAATTGTGCTAGCACTAAAAATCAAAGGCATAAACTTTGAGTATGTGGAAGAAGATTTAGCAAATAAGAGTGAATTGCTTCTCCAGTACAATCCAGTTCATCAAAAAGTCCCAGTACTCGTCCATAAAGGAAGGCCAATTGCAGAGTCCTTTGTCATTCTTGAATACATAGAAGAAAATTGGAACTACCATCCCAAAATTCTACCTGATCACCCATATGAAAGAGCCAAAGTTCGCTTCTGGGCGCAATTCTATGATCAAAAGGTTTGA 330 38.79 MEEKQSDVVLFGTWYSSYCTRIVLALKIKGINFEYVEEDLANKSELLLQYNPVHQKVPVLVHKGRPIAESFVILEYIEENWNYHPKILPDHPYERAKVRFWAQFYDQKV 109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34922965 34923294 - CcPI632755_05g027020.1 Cco05g2702 180330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2702 109 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 6 85 IPR004045 -
Cco05g2702 109 FunFam Tau class glutathione S-transferase 1 89 - -
Cco05g2702 109 CDD GST_N_Tau 8 81 - -
Cco05g2702 109 SFLD Glutathione Transferase (cytosolic) 9 108 IPR040079 -
Cco05g2702 109 Gene3D Glutaredoxin 1 86 - -
Cco05g2702 109 SFLD Main (cytGST) 9 108 - -
Cco05g2702 109 SUPERFAMILY Thioredoxin-like 7 108 IPR036249 -
Cco05g2702 109 Gene3D - 87 109 - -
Cco05g2702 109 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 108 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cco05g2702 109 ProSiteProfiles Glutaredoxin domain profile. 1 95 - -
Cco05g2702 109 Pfam Glutathione S-transferase, N-terminal domain 8 79 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2702 Cco-Chr5:34922965 Cco07g1132 Cco-Chr7:25014093 3.30E-30 dispersed
Cco01g0892 Cco-Chr1:9839604 Cco05g2702 Cco-Chr5:34922965 1.90E-24 transposed
Cco05g0297 Cco-Chr5:2362607 Cco05g2702 Cco-Chr5:34922965 7.80E-34 transposed
Cco06g1642 Cco-Chr6:27029622 Cco05g2702 Cco-Chr5:34922965 5.60E-27 transposed
Cco01g1820 Cco-Chr1:30844403 Cco05g2702 Cco-Chr5:34922965 3.20E-18 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2702 K00799 - vvi:100260235 175.252