Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2702 ATGGAAGAGAAACAAAGCGATGTGGTGTTGTTTGGAACGTGGTATAGTTCATACTGCACTAGAATTGTGCTAGCACTAAAAATCAAAGGCATAAACTTTGAGTATGTGGAAGAAGATTTAGCAAATAAGAGTGAATTGCTTCTCCAGTACAATCCAGTTCATCAAAAAGTCCCAGTACTCGTCCATAAAGGAAGGCCAATTGCAGAGTCCTTTGTCATTCTTGAATACATAGAAGAAAATTGGAACTACCATCCCAAAATTCTACCTGATCACCCATATGAAAGAGCCAAAGTTCGCTTCTGGGCGCAATTCTATGATCAAAAGGTTTGA 330 38.79 MEEKQSDVVLFGTWYSSYCTRIVLALKIKGINFEYVEEDLANKSELLLQYNPVHQKVPVLVHKGRPIAESFVILEYIEENWNYHPKILPDHPYERAKVRFWAQFYDQKV 109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34922965 34923294 - CcPI632755_05g027020.1 Cco05g2702 180330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2702 109 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 6 85 IPR004045 -
Cco05g2702 109 FunFam Tau class glutathione S-transferase 1 89 - -
Cco05g2702 109 CDD GST_N_Tau 8 81 - -
Cco05g2702 109 SFLD Glutathione Transferase (cytosolic) 9 108 IPR040079 -
Cco05g2702 109 Gene3D Glutaredoxin 1 86 - -
Cco05g2702 109 SFLD Main (cytGST) 9 108 - -
Cco05g2702 109 SUPERFAMILY Thioredoxin-like 7 108 IPR036249 -
Cco05g2702 109 Gene3D - 87 109 - -
Cco05g2702 109 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 108 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cco05g2702 109 ProSiteProfiles Glutaredoxin domain profile. 1 95 - -
Cco05g2702 109 Pfam Glutathione S-transferase, N-terminal domain 8 79 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2702 K00799 - - vvi:100260235 175.252
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2702 Cco-Chr5:34922965 Cco07g1132 Cco-Chr7:25014093 3.30E-30 dispersed
Cco01g0892 Cco-Chr1:9839604 Cco05g2702 Cco-Chr5:34922965 1.90E-24 transposed
Cco05g0297 Cco-Chr5:2362607 Cco05g2702 Cco-Chr5:34922965 7.80E-34 transposed
Cco06g1642 Cco-Chr6:27029622 Cco05g2702 Cco-Chr5:34922965 5.60E-27 transposed
Cco01g1820 Cco-Chr1:30844403 Cco05g2702 Cco-Chr5:34922965 3.20E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g909 . . . . . . Bma14g01643 . . Cmo18g01176 . Cma18g01154 . Car18g01063 . . . . . . . . . . Cla05g02445 Cam05g2631 Cec05g2664 Cco05g2702 Clacu05g2634 Cmu05g2488 Cre05g2601 . . . . Lsi04g00429 . . Cme10g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco09g0578 . 1 210 Glutathione S-transferase Gene Family AT4G02520 60.1 4.8e-65 244.6
Cco09g0580 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.1 6.9e-64 240.7
Cco09g0579 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.7 8.8e-59 223.8
Cco09g0578 . 1 211 Glutathione S-transferase Gene Family AT2G02930 61.2 2.5e-66 248.8
Cco09g0580 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.3 2.0e-63 239.2
Cco09g0579 . 1 210 Glutathione S-transferase Gene Family AT2G02930 56.3 7.9e-60 227.3
Cco09g0580 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.2 9.5e-60 227.3
Cco09g0578 . 6 215 Glutathione S-transferase Gene Family AT1G02950 55.0 1.6e-59 226.5
Cco09g0579 . 5 206 Glutathione S-transferase Gene Family AT1G02950 51.7 2.5e-52 202.6
Cco09g0578 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.8 5.2e-64 241.1
Cco09g0580 . 1 210 Glutathione S-transferase Gene Family AT1G02930 56.2 5.8e-63 237.7
Cco09g0579 . 1 210 Glutathione S-transferase Gene Family AT1G02930 52.9 8.0e-57 217.2
Cco09g0578 . 1 211 Glutathione S-transferase Gene Family AT1G02920 60.2 2.1e-65 245.7
Cco09g0580 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.7 5.2e-64 241.1
Cco09g0579 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.3 8.6e-59 223.8
Cco09g0580 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.8 2.0e-68 256.1
Cco09g0578 . 4 215 Glutathione S-transferase Gene Family AT2G47730 58.2 1.6e-65 246.5
Cco09g0579 . 1 214 Glutathione S-transferase Gene Family AT2G47730 55.8 1.0e-61 233.8
Cco09g0581 . 1 214 Glutathione S-transferase Gene Family AT3G62760 58.4 2.0e-74 275.8
Cco09g0578 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.5 2.2e-48 189.5
Cco04g0940 . 3 214 Glutathione S-transferase Gene Family AT3G09270 53.3 1.6e-63 239.6
Cco04g0938 . 3 213 Glutathione S-transferase Gene Family AT3G09270 52.8 4.7e-63 238.0
Cco04g0951 . 3 217 Glutathione S-transferase Gene Family AT3G09270 51.9 2.2e-60 229.2
Cco05g0297 . 2 213 Glutathione S-transferase Gene Family AT3G09270 51.9 1.1e-59 226.9
Cco04g0953 . 3 212 Glutathione S-transferase Gene Family AT3G09270 52.8 1.1e-54 210.3
Cco05g2702 . 1 109 Glutathione S-transferase Gene Family AT1G74590 60.6 3.5e-37 152.1
Cco07g1132 . 1 214 Glutathione S-transferase Gene Family AT1G78380 71.0 1.2e-87 319.7
Cco07g1134 . 1 216 Glutathione S-transferase Gene Family AT1G78380 70.4 1.2e-87 319.7
Cco07g1133 . 1 217 Glutathione S-transferase Gene Family AT1G78380 61.3 3.2e-72 268.5
Cco01g0892 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.4 8.2e-68 253.8
Cco07g1132 . 7 214 Glutathione S-transferase Gene Family AT1G78370 64.9 3.5e-79 291.6
Cco07g1134 . 7 214 Glutathione S-transferase Gene Family AT1G78370 62.0 1.5e-74 276.2
Cco01g0892 . 7 220 Glutathione S-transferase Gene Family AT1G78370 54.7 5.4e-64 241.1
Cco07g1133 . 7 216 Glutathione S-transferase Gene Family AT1G78370 52.9 1.1e-61 233.4
Cco07g1132 . 1 214 Glutathione S-transferase Gene Family AT1G78340 64.5 5.4e-80 294.3
Cco07g1134 . 1 216 Glutathione S-transferase Gene Family AT1G78340 64.4 9.3e-80 293.5
Cco07g1133 . 1 217 Glutathione S-transferase Gene Family AT1G78340 53.9 7.1e-64 240.7
Cco01g0892 . 4 218 Glutathione S-transferase Gene Family AT1G78340 54.0 3.5e-63 238.4
Cco07g1132 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.2 2.5e-60 228.8
Cco07g1132 . 1 218 Glutathione S-transferase Gene Family AT1G17180 70.2 1.5e-90 329.3
Cco07g1134 . 1 219 Glutathione S-transferase Gene Family AT1G17180 63.9 2.4e-83 305.4
Cco07g1133 . 1 220 Glutathione S-transferase Gene Family AT1G17180 56.4 2.1e-71 265.8
Cco01g0892 . 4 224 Glutathione S-transferase Gene Family AT1G17180 55.7 1.7e-68 256.1
Cco07g1132 . 3 217 Glutathione S-transferase Gene Family AT1G17190 58.6 1.5e-74 276.2
Cco07g1134 . 2 217 Glutathione S-transferase Gene Family AT1G17190 56.9 1.1e-72 270.0
Cco07g1132 . 3 214 Glutathione S-transferase Gene Family AT3G43800 58.8 3.3e-72 268.5
Cco07g1134 . 3 214 Glutathione S-transferase Gene Family AT3G43800 56.9 6.9e-70 260.8
Cco07g1132 . 4 218 Glutathione S-transferase Gene Family AT1G53680 58.1 5.2e-70 261.2
Cco07g1134 . 2 219 Glutathione S-transferase Gene Family AT1G53680 56.4 6.4e-68 254.2
Cco01g0892 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 9.6e-64 240.4
Cco02g0032 . 55 221 Glutathione S-transferase Gene Family AT2G02390 67.7 1.1e-60 229.9
Cco05g0266 . 61 227 Glutathione S-transferase Gene Family AT2G02390 51.5 7.0e-47 184.1
Cco02g0032 . 14 224 Glutathione S-transferase Gene Family AT2G02380 64.5 3.2e-75 278.5
Cco05g0266 . 18 226 Glutathione S-transferase Gene Family AT2G02380 53.6 1.1e-59 226.9
Cco07g0857 . 37 273 Glutathione S-transferase Gene Family AT5G41210 68.4 9.1e-92 333.6
Cco07g0857 . 37 273 Glutathione S-transferase Gene Family AT5G41240 66.7 1.0e-88 324.7
Cco10g2060 . 1 235 Glutathione S-transferase Gene Family AT5G02780 67.4 6.3e-90 327.4
Cco10g2059 . 13 232 Glutathione S-transferase Gene Family AT5G02780 68.9 2.6e-83 305.4
Cco02g1483 . 75 294 Glutathione S-transferase Gene Family AT5G02780 65.8 3.5e-80 295.0
Cco02g1483 . 29 292 Glutathione S-transferase Gene Family AT3G55040 61.1 1.5e-85 313.2
Cco10g2060 . 6 233 Glutathione S-transferase Gene Family AT3G55040 60.1 1.6e-79 293.1
Cco10g2059 . 3 234 Glutathione S-transferase Gene Family AT3G55040 58.4 8.9e-78 287.3
Cco10g2060 . 1 235 Glutathione S-transferase Gene Family AT5G02790 69.8 7.6e-96 347.1
Cco10g2059 . 7 232 Glutathione S-transferase Gene Family AT5G02790 69.2 1.8e-89 325.9
Cco02g1483 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.9 3.7e-82 301.6
Cco02g1456 . 1 212 Glutathione S-transferase Gene Family AT1G19570 65.7 1.4e-80 296.2
Cco05g1317 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.9 3.1e-72 268.5
Cco02g1456 . 1 211 Glutathione S-transferase Gene Family AT1G75270 69.8 5.0e-86 314.3
Cco05g1317 . 65 272 Glutathione S-transferase Gene Family AT1G75270 62.2 3.9e-75 278.1
Cco05g1317 . 54 274 Glutathione S-transferase Gene Family AT5G16710 77.4 9.2e-103 370.2
Cco02g1456 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.1 4.9e-72 268.1
Cco11g1651 . 515 770 Glutathione S-transferase Gene Family AT1G77290 69.1 4.3e-103 371.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012942 0 1 0 2 0 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 2 28