Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2708 ATGGATGGTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAGAAAAAGGAAGAACAACAACAGCCATGTTCCTCCTCCGCAAACAACGGAGGAACAACAACGACGACAATAACAACAACTCCAAATCCAAATCTTCAATCTTCTTCTTCACCCAAGAAGCCACCTCCCAAAAGGGCCACCACCAAAGACCGTCACACAAAAGTCGATGGCCGTGGCCGTCGGATTCGTATGCCTGCCCTTTGTGCTGCTAGGGTTTTTCAACTCACTCGAGAGCTCGGCCACAAGTCCGATGGCGAAACAATTGAGTGGCTTCTACAACAAGCTGAGCCTGCCGTTATTGCTGCAACGGGTACTGGTACCATTCCAGCTAATTTCACTTCTCTTAATATCTCCCTCCGTAGCTCCGGCTCCACCATTTCCGCTCCTTCTCATCTTCGGACGAGCTATTTTAGTCCCACGCAATTCGCCGTCAGAACAAGATCCGATCTTTGGGACAGAAACAACAATCATAATCATAATCTCGTGGATGATTCCTCTACGTTCTTGAATTTCAACGCTCCTAATTATGTGAACGTGTTCAAGCAAGATCAAGGTGGGATTGACGTCACCGAGGCGGGAAAGAAACGGCGGTCGGAGCAGTCAGAATCATCGTCGGATAATTATTTGGTTCAAACGAGTACCGGATCAATTCCAGCGAGTCAAAGCAGTCCATTGCCGGCGACATTTTGGATGGTGACGAATCCAAGCAATCAAGGGAGTGATCCGATGTGGACATTTCCGTCGGTGGGTAACAGCAGCATGTTGAGAGGGGCGGGGACGGTTGGTGGCGGCGGCGGCGGCGGCGGGGGATTTCATTTCATGAATCTGCCACCACCAATGGCACTTTTGCCAAGTGGACAACAGTTGGGGACAGGAATCGGCAGTGGCGGTGGTCCGGCGACGGAGAGCCACTTGGGTATGTTGGCTGCTCTAAGTGCTTATAGAACAACGATGCCGGGATTGTCAGTTTCAGAATCTCCAACATCGAATAATCCTGATCAATCATAG 1062 49.62 MDGENGIRRPNFPLQLLEKKKEEQQQPCSSSANNGGTTTTTITTTPNPNLQSSSSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRNNNHNHNLVDDSSTFLNFNAPNYVNVFKQDQGGIDVTEAGKKRRSEQSESSSDNYLVQTSTGSIPASQSSPLPATFWMVTNPSNQGSDPMWTFPSVGNSSMLRGAGTVGGGGGGGGGFHFMNLPPPMALLPSGQQLGTGIGSGGGPATESHLGMLAALSAYRTTMPGLSVSESPTSNNPDQS 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34968929 34969990 + CcPI632755_05g027080.1 Cco05g2708 180336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2708 353 MobiDBLite consensus disorder prediction 221 239 - -
Cco05g2708 353 MobiDBLite consensus disorder prediction 26 60 - -
Cco05g2708 353 MobiDBLite consensus disorder prediction 1 79 - -
Cco05g2708 353 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 31 321 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cco05g2708 353 Pfam TCP family transcription factor 65 178 IPR017887 -
Cco05g2708 353 ProSiteProfiles TCP domain profile. 66 120 IPR017887 -
Cco05g2708 353 MobiDBLite consensus disorder prediction 209 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2708 Cco-Chr5:34968929 Cco06g0018 Cco-Chr6:190968 6.00E-28 dispersed
Cco11g1390 Cco-Chr11:26691479 Cco05g2708 Cco-Chr5:34968929 9.30E-38 transposed
Cco01g1830 Cco-Chr1:30897842 Cco05g2708 Cco-Chr5:34968929 9.60E-45 wgd
Cco05g2708 Cco-Chr5:34968929 Cco06g1829 Cco-Chr6:28593417 1.20E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59398 PF03634 TCP 3.90E-38 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2708 - - - 0.0