Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2708 | ATGGATGGTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAGAAAAAGGAAGAACAACAACAGCCATGTTCCTCCTCCGCAAACAACGGAGGAACAACAACGACGACAATAACAACAACTCCAAATCCAAATCTTCAATCTTCTTCTTCACCCAAGAAGCCACCTCCCAAAAGGGCCACCACCAAAGACCGTCACACAAAAGTCGATGGCCGTGGCCGTCGGATTCGTATGCCTGCCCTTTGTGCTGCTAGGGTTTTTCAACTCACTCGAGAGCTCGGCCACAAGTCCGATGGCGAAACAATTGAGTGGCTTCTACAACAAGCTGAGCCTGCCGTTATTGCTGCAACGGGTACTGGTACCATTCCAGCTAATTTCACTTCTCTTAATATCTCCCTCCGTAGCTCCGGCTCCACCATTTCCGCTCCTTCTCATCTTCGGACGAGCTATTTTAGTCCCACGCAATTCGCCGTCAGAACAAGATCCGATCTTTGGGACAGAAACAACAATCATAATCATAATCTCGTGGATGATTCCTCTACGTTCTTGAATTTCAACGCTCCTAATTATGTGAACGTGTTCAAGCAAGATCAAGGTGGGATTGACGTCACCGAGGCGGGAAAGAAACGGCGGTCGGAGCAGTCAGAATCATCGTCGGATAATTATTTGGTTCAAACGAGTACCGGATCAATTCCAGCGAGTCAAAGCAGTCCATTGCCGGCGACATTTTGGATGGTGACGAATCCAAGCAATCAAGGGAGTGATCCGATGTGGACATTTCCGTCGGTGGGTAACAGCAGCATGTTGAGAGGGGCGGGGACGGTTGGTGGCGGCGGCGGCGGCGGCGGGGGATTTCATTTCATGAATCTGCCACCACCAATGGCACTTTTGCCAAGTGGACAACAGTTGGGGACAGGAATCGGCAGTGGCGGTGGTCCGGCGACGGAGAGCCACTTGGGTATGTTGGCTGCTCTAAGTGCTTATAGAACAACGATGCCGGGATTGTCAGTTTCAGAATCTCCAACATCGAATAATCCTGATCAATCATAG | 1062 | 49.62 | MDGENGIRRPNFPLQLLEKKKEEQQQPCSSSANNGGTTTTTITTTPNPNLQSSSSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRNNNHNHNLVDDSSTFLNFNAPNYVNVFKQDQGGIDVTEAGKKRRSEQSESSSDNYLVQTSTGSIPASQSSPLPATFWMVTNPSNQGSDPMWTFPSVGNSSMLRGAGTVGGGGGGGGGFHFMNLPPPMALLPSGQQLGTGIGSGGGPATESHLGMLAALSAYRTTMPGLSVSESPTSNNPDQS | 353 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 34968929 | 34969990 | + | CcPI632755_05g027080.1 | Cco05g2708 | 180336 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2708 | 353 | MobiDBLite | consensus disorder prediction | 221 | 239 | - | - | |
Cco05g2708 | 353 | MobiDBLite | consensus disorder prediction | 26 | 60 | - | - | |
Cco05g2708 | 353 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
Cco05g2708 | 353 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 31 | 321 | IPR005333 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Cco05g2708 | 353 | Pfam | TCP family transcription factor | 65 | 178 | IPR017887 | - | |
Cco05g2708 | 353 | ProSiteProfiles | TCP domain profile. | 66 | 120 | IPR017887 | - | |
Cco05g2708 | 353 | MobiDBLite | consensus disorder prediction | 209 | 239 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2708 | Cco-Chr5:34968929 | Cco06g0018 | Cco-Chr6:190968 | 6.00E-28 | dispersed | |
Cco11g1390 | Cco-Chr11:26691479 | Cco05g2708 | Cco-Chr5:34968929 | 9.30E-38 | transposed | |
Cco01g1830 | Cco-Chr1:30897842 | Cco05g2708 | Cco-Chr5:34968929 | 9.60E-45 | wgd | |
Cco05g2708 | Cco-Chr5:34968929 | Cco06g1829 | Cco-Chr6:28593417 | 1.20E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59398 | PF03634 | TCP | 3.90E-38 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2708 | - | - | - | 0.0 |