Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2713 ATGTCCGCCAGAAGCTCGCGTTCTAGACGCTCGGGTGTTCCTTCAAGGAACATTTCTGACGACCAAATTGCTGATTTGATCTCAAAATTACAGCAGCTCATCCCTGAGATTCGTAATGGACGTTCCTCCTCCAGGGTATCAGCTTCTAAGGTTCTACAAGAGACTTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGATGATTTAAGCGATCGATTATCGGAGCTATTGGCATCAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAA 288 44.1 MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35040256 35041656 + CcPI632755_05g027130.1 Cco05g2713 180341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2713 95 FunFam Transcription factor ILI6 7 91 - -
Cco05g2713 95 Gene3D - 21 89 IPR036638 GO:0046983(InterPro)
Cco05g2713 95 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983(InterPro)
Cco05g2713 95 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 62 IPR011598 GO:0046983(InterPro)
Cco05g2713 95 CDD bHLH_AtPRE_like 18 79 - -
Cco05g2713 95 PANTHER TRANSCRIPTION FACTOR PRE 1 95 IPR044293 GO:0006355(InterPro)|GO:0040008(InterPro)|GO:0046983(InterPro)
Cco05g2713 95 Pfam Helix-loop-helix DNA-binding domain 21 63 IPR011598 GO:0046983(InterPro)
Cco05g2713 95 Coils Coil 52 79 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2713 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1834 Cco-Chr1:30926546 Cco05g2713 Cco-Chr5:35040256 1.20E-11 dispersed
Cco01g1586 Cco-Chr1:28568124 Cco05g2713 Cco-Chr5:35040256 1.70E-24 wgd
Cco05g2713 Cco-Chr5:35040256 Cco06g1832 Cco-Chr6:28623814 2.00E-26 wgd
Cco05g2713 Cco-Chr5:35040256 Cco08g1038 Cco-Chr8:22200758 1.60E-28 wgd
Cco05g2713 Cco-Chr5:35040256 Cco09g2036 Cco-Chr9:34698625 6.30E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g883 Blo01g00423 Blo16g01124 Bda01g02165 Bda11g01226 Bpe13g01421 . . . Cmo04g01724 . . . . . Sed06g1543 Cpe09g00166 Cpe01g01455 Bhi07g01587 Tan04g1097 Cmetu10g1757 Lac13g0303 Hepe10g1727 . . Cla05g02457 Cam05g2643 Cec05g2676 Cco05g2713 Clacu05g2647 Cmu05g2501 Cre05g2614 Cone13ag0965 Cone19ag0957 Cone6ag0602 Cone9ag0607 . Csa05g02434 Chy10g00987 Cme10g00431 Blo06g00900 Blo11g00764 Bda07g01462 Bda11g01226 Bpe11g01635 Bpe02g02351 Bma01g00090 Bma06g00676 . Cmo04g02887 . Cma04g01645 . Car04g01686 Car15g00275 Cpe13g00943 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000232 9 5 5 6 7 5 7 5 5 5 5 5 7 5 5 4 5 6 8 5 4 4 5 2 4 5 5 8 5 3 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59399 PF00010 HLH 3.50E-07 No_clan Cco TF