Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2715 | ATGATGGGAAAGAGGACAAGATTCCGGCCGCAGACGGCGGCGATTGCAGCTCCGGCCACCATGACAAGCAATGGGATGGCTTTTTTCCCAGCAAATTTCATGCTACAAACTTCCCATGAAGATCATGATCATCATCACCACTCTAATTCTCCTCCATCTCTCAACCCAATTCTACCTTCTTGCACACCCCAAGATTTTCATGGAGTTGCATCTTTTCTAGGAAAACGATCTATGTCATTTTCAGGGGCGGAAATGGTGGAAGAAGGGAATAACGGTGAGGATGAATTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGAAGACTTAACATGGAGCAAGTGAAAACACTTGAGAAAAATTTCGAATTGGGAAATAAACTTGAACCTGAGAGAAAAATGCAGCTGGCTAGAGCCCTTGGTCTGCAGCCAAGACAAATTGCTATTTGGTTTCAAAACAGAAGAGCTCGCTGGAAAACCAAGCAGCTTGAAAAAGACTATGATCTTCTCAAAAGACAATTTGAAGCTATCAAATCAGATAACGAAGCCCTCAAATCCCACAACCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAGCCAACAGAATCAATCAACCTGAACAAAGAAACAGAGGGATCTTGCAGTAACAGAAGTGAAAACAGCTCTGATAATATAAAATTAGACATCTCAAGAACACCAGCCATTGATAGCCCTCATCAGCATCAGCATCAACATCCAACAAATAGGCCTCTTTTTCCCAATTCTTCCTTAAGGCCTCCAGCTTTGGCTCAACTCTTTCAAACCTCTTCAAGATCATCAGATCATCCACCAAAGCAACTTGATAATCATCATCAAATCCCTAAAGAAGAAAGCAGCAGTTTGTCCAATATGTTCTGTGGAATGGATGATCACTCTGGCTTCTGGCCTTGGTTGGAGCAACAACATTTCAACTGA | 963 | 42.16 | MMGKRTRFRPQTAAIAAPATMTSNGMAFFPANFMLQTSHEDHDHHHHSNSPPSLNPILPSCTPQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSHNQKLQAEIMALKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHQHPTNRPLFPNSSLRPPALAQLFQTSSRSSDHPPKQLDNHHQIPKEESSSLSNMFCGMDDHSGFWPWLEQQHFN | 320 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 35056980 | 35059803 | + | CcPI632755_05g027150.1 | Cco05g2715 | 180343 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2715 | 320 | Pfam | Homeobox associated leucine zipper | 161 | 201 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g2715 | 320 | MobiDBLite | consensus disorder prediction | 209 | 231 | - | - | |
Cco05g2715 | 320 | MobiDBLite | consensus disorder prediction | 84 | 106 | - | - | |
Cco05g2715 | 320 | ProSiteProfiles | 'Homeobox' domain profile. | 101 | 161 | IPR001356 | GO:0003677(InterPro) | |
Cco05g2715 | 320 | SMART | HOX_1 | 104 | 165 | IPR001356 | GO:0003677(InterPro) | |
Cco05g2715 | 320 | MobiDBLite | consensus disorder prediction | 202 | 300 | - | - | |
Cco05g2715 | 320 | Gene3D | - | 98 | 167 | - | - | |
Cco05g2715 | 320 | SUPERFAMILY | Homeodomain-like | 95 | 163 | IPR009057 | - | |
Cco05g2715 | 320 | ProSitePatterns | 'Homeobox' domain signature. | 136 | 159 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cco05g2715 | 320 | CDD | homeodomain | 106 | 162 | IPR001356 | GO:0003677(InterPro) | |
Cco05g2715 | 320 | PRINTS | Lambda-repressor HTH signature | 141 | 157 | IPR000047 | GO:0003677(InterPro) | |
Cco05g2715 | 320 | PRINTS | Lambda-repressor HTH signature | 132 | 141 | IPR000047 | GO:0003677(InterPro) | |
Cco05g2715 | 320 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 84 | 301 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
Cco05g2715 | 320 | Pfam | Homeodomain | 106 | 159 | IPR001356 | GO:0003677(InterPro) | |
Cco05g2715 | 320 | MobiDBLite | consensus disorder prediction | 238 | 278 | - | - | |
Cco05g2715 | 320 | Coils | Coil | 153 | 201 | - | - | |
Cco05g2715 | 320 | FunFam | Homeobox-leucine zipper protein ATHB-13 | 98 | 165 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2715 | Cco-Chr5:35056980 | Cco10g0805 | Cco-Chr10:16279963 | 1.90E-25 | dispersed | |
Cco05g2715 | Cco-Chr5:35056980 | Cco09g2039 | Cco-Chr9:34764476 | 1.20E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59400 | PF00046 | Homeodomain | 3.30E-15 | CL0123 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2715 | K09338 | - | csv:101221595 | 564.303 |