Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2715 ATGATGGGAAAGAGGACAAGATTCCGGCCGCAGACGGCGGCGATTGCAGCTCCGGCCACCATGACAAGCAATGGGATGGCTTTTTTCCCAGCAAATTTCATGCTACAAACTTCCCATGAAGATCATGATCATCATCACCACTCTAATTCTCCTCCATCTCTCAACCCAATTCTACCTTCTTGCACACCCCAAGATTTTCATGGAGTTGCATCTTTTCTAGGAAAACGATCTATGTCATTTTCAGGGGCGGAAATGGTGGAAGAAGGGAATAACGGTGAGGATGAATTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGAAGACTTAACATGGAGCAAGTGAAAACACTTGAGAAAAATTTCGAATTGGGAAATAAACTTGAACCTGAGAGAAAAATGCAGCTGGCTAGAGCCCTTGGTCTGCAGCCAAGACAAATTGCTATTTGGTTTCAAAACAGAAGAGCTCGCTGGAAAACCAAGCAGCTTGAAAAAGACTATGATCTTCTCAAAAGACAATTTGAAGCTATCAAATCAGATAACGAAGCCCTCAAATCCCACAACCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAGCCAACAGAATCAATCAACCTGAACAAAGAAACAGAGGGATCTTGCAGTAACAGAAGTGAAAACAGCTCTGATAATATAAAATTAGACATCTCAAGAACACCAGCCATTGATAGCCCTCATCAGCATCAGCATCAACATCCAACAAATAGGCCTCTTTTTCCCAATTCTTCCTTAAGGCCTCCAGCTTTGGCTCAACTCTTTCAAACCTCTTCAAGATCATCAGATCATCCACCAAAGCAACTTGATAATCATCATCAAATCCCTAAAGAAGAAAGCAGCAGTTTGTCCAATATGTTCTGTGGAATGGATGATCACTCTGGCTTCTGGCCTTGGTTGGAGCAACAACATTTCAACTGA 963 42.16 MMGKRTRFRPQTAAIAAPATMTSNGMAFFPANFMLQTSHEDHDHHHHSNSPPSLNPILPSCTPQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSHNQKLQAEIMALKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHQHPTNRPLFPNSSLRPPALAQLFQTSSRSSDHPPKQLDNHHQIPKEESSSLSNMFCGMDDHSGFWPWLEQQHFN 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35056980 35059803 + CcPI632755_05g027150.1 Cco05g2715 180343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2715 320 Pfam Homeobox associated leucine zipper 161 201 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2715 320 MobiDBLite consensus disorder prediction 209 231 - -
Cco05g2715 320 MobiDBLite consensus disorder prediction 84 106 - -
Cco05g2715 320 ProSiteProfiles 'Homeobox' domain profile. 101 161 IPR001356 GO:0003677(InterPro)
Cco05g2715 320 SMART HOX_1 104 165 IPR001356 GO:0003677(InterPro)
Cco05g2715 320 MobiDBLite consensus disorder prediction 202 300 - -
Cco05g2715 320 Gene3D - 98 167 - -
Cco05g2715 320 SUPERFAMILY Homeodomain-like 95 163 IPR009057 -
Cco05g2715 320 ProSitePatterns 'Homeobox' domain signature. 136 159 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco05g2715 320 CDD homeodomain 106 162 IPR001356 GO:0003677(InterPro)
Cco05g2715 320 PRINTS Lambda-repressor HTH signature 141 157 IPR000047 GO:0003677(InterPro)
Cco05g2715 320 PRINTS Lambda-repressor HTH signature 132 141 IPR000047 GO:0003677(InterPro)
Cco05g2715 320 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 84 301 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cco05g2715 320 Pfam Homeodomain 106 159 IPR001356 GO:0003677(InterPro)
Cco05g2715 320 MobiDBLite consensus disorder prediction 238 278 - -
Cco05g2715 320 Coils Coil 153 201 - -
Cco05g2715 320 FunFam Homeobox-leucine zipper protein ATHB-13 98 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2715 Cco-Chr5:35056980 Cco10g0805 Cco-Chr10:16279963 1.90E-25 dispersed
Cco05g2715 Cco-Chr5:35056980 Cco09g2039 Cco-Chr9:34764476 1.20E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59400 PF00046 Homeodomain 3.30E-15 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2715 K09338 - csv:101221595 564.303