Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2719 ATGAAAGCTAAAAATGAATTTAGGGTGGAAAAGAAAGAATGGCGAAGAACCGAATCGGAGAAGAAATTAACTGCCAGAGTGCCTTTTCACGAAGGATATAGAAGGTCGCAAACGACTGTATTGGAAGATCTTTTAAACGGAACGGAATGCCAAAGTAAAAGACAACGGCAAAAGCTCGACTTGGCGCCGTTAGCTGCGTGGACTTACAAATTCCGATGGCGCCTAATGGGCTTCATTACGGAGCAAGTCCACTACGACGTATCTTTTACGATAACACGTTTCAACTCTTATTTAAGTCGACGACATGTCGCTTACGCTCAAAAGGCCGAAACGATGCGTTTCACCGTGCTTTTAAGCTGGAGAAGTAAGGTAAATTGTCCATATCAAAGTCTCACGAGCAAGGGTTTGCAAAGAGCCCATATGTCGGGACAACACTCCATCTCAATTCTCAATGCCTTGTTCGTTGACCATGGATGGTCTTTGAGTTCGCCATTCATTTCCATTTTGGGAGTGCGCTTGACCCTCGAGCCCCCTAACCACACTAAACGGCGGCGGCTGGGCGTCGCTAGACGCCAATATCGACCCAATCCCCTGTTCGGCAGCAAAACAGCCAATGAGCCTCTGACGGTGGCCAACGGCGTTTTTTTCTGCGGCGCCAAATGCATAGTTTTGAGTTACAGCTTCAAGAACATGAAGACTTCCTGGGTTTCTTTTTCTTTTTGGTTTCCTGCTTTCATTTTTGCTGTTATCTTTCCAGTTTCAACAGGGCAACTTCCTCCAAGCGAAACCAGAATTCTATTTGAGATTCAAAAACTTCTGGAATATCCTGTTGCTCTTCAGGGCTGGTCAAACTGGACCAACTTCTGCTATTTACCTCCTTCTTCTTCACTCAAAATTGCCTGTTCTGGTAATCACATAACAGAATTAACTGTCATTGGAAACAAAAGCTCTCCTTCCAAAGCTCCAAAATCAGTTTCTGTGAGTTCCATCCCTTCTCGGGACACTCTCTCAAATAGTTTCTCCATCGATTCCTTCTTCACTGTTCTCACCAAGCTTTCAAACCTGAGAGTCTTATCATTAGTGTCCTTGGGATTGTGGGGTTCTTTTCCTTCCAAAGTTAACAGGCTCTCATCTTTGGAAGTGCTTAACATAAGCTCAAATTACATCTATGGAGGCATCCCTACAACAATCTCAAAACTTCAAAGTCTCAAGAGCCTTGTTTTGGCTGACAATTTGCTCAACGGAACTGTTCCAGATTTTAGAGGCCTTGCAGTTCTTGAAGAGCTGAATTTAGGACAAAATCGACTAGGACAAAAGGCTCCTTCTCTGGGAGAAACTCTTGTAATCGTCATACTGAGGAAAAACTTGTTCAGATCCGAAATCCCCTCGAGAATCTTGGAATTCAATAAGCTTCAGCTATTAGATATCTCCTACAATAAGTTTCTTGGGCCAATCCATGCTTCACTTTTCTCTCTACCCGCAGTTCAGTATCTCAACCTAGCTTATAACCAATTAAGCGGGCCACTCTCTTTTAACACAACTTGCAACAGAAACCTTAAGTTTGTAGACATTTCACACAACCTTTTGATAGGAAAATTACCTTCTTGCATCATACCAAATCGCACAGTAAATATTTCTTGGAACTGCTTGTCAAGTGGAAGCTCGAAGGACCAGCATACTTATTCCTACTGCCATAAGGAAGCAATGGCTGTGAAGCCTCCAGGTGACTCACAGAAACAGAAACTTAGCATCAAACTGGGTCTCATGCTTGCAATCATTGGAGGCGTTGTTGGAATTTCGGTTGTTGTTCTGTTGTTAGTTTGTGCAATCATCCGAAACAGAAGAAGATTGGGAGAGACCAAATATGAGAAATCTACAGCTGATAAACCCTCTGTCCGTGGCTCCCCCCTTCCTAACAGACGTGTACCGCAGACACGGCTACCAGCACTTGGGCTGCCGCCATATCGGGTCTTCACATTGGAGGAAATCGAAGACGTCACAAGAAACTTCGACCCATCAGGCTTGGCCGCTGAAGAACCCGAAGCAAAGACATATAAAGGTTGGCTGCCTGATGGTTCAGTGGTCCTGATCAAGTGCTTTAAACTAAAGCAAAAACTTGTACCTCAAGCCTTAGCGCGGCACATGGAAGAACTGCCAAATCTGAGGCATCGGCATTTGGTCAGTGTTCTTGGACACTGCACTTTCACTCATCAGGATCAATTGAACCCAGCTAGCACTGTCTTCATTATTAATGAATACATATCCAACGGCTCATTGAAGGATTGTCTTACAGATTGGAAAAGGAAGGATGCTCTCAAATGGCCACAGAGAATGGGGATAACCATCGGCATTGCCAGAGGAATACAGCATTTGCATACTGGAATGGCGTCTGGCATCTTTGGGAACGATATCAAGATTGATAACGTTTTGTTGGATGAGACACTGACTGCAAAAATAAGCAATTACAACGTCCTCATGCCGCTAAAGAATGCAGAGAATGGGTTGAATGTAACAAAAAGAAGCGAGAACCCAGAGAAGGAAGATATCTTTCAATTTGGTGCTATTTTGCTGCAAGTCATCAATGGCAGACCGATCACAGCCATGAGTGAACTGGATGATCTGAAGAGTGAGATTGAAAGTGGCTTGGGAGAAGTACTGAGATTACGGGGCGTAATTGATCCTTCGATTCAGGGTTCTTTTGCATTTGATTCACTGAAAACCACAATTCAAATTGCCATCAACTGCCTCAACAAGGATCCAAACAAGCGACCTTCCATTGAAGATGTACTCTGGAATTTGCAATATTCAATGCAAGTTCAAGAAGGATGGACAAGTAGTGGAAACCTCGGAACTTTCATCTAA 2862 43.75 MKAKNEFRVEKKEWRRTESEKKLTARVPFHEGYRRSQTTVLEDLLNGTECQSKRQRQKLDLAPLAAWTYKFRWRLMGFITEQVHYDVSFTITRFNSYLSRRHVAYAQKAETMRFTVLLSWRSKVNCPYQSLTSKGLQRAHMSGQHSISILNALFVDHGWSLSSPFISILGVRLTLEPPNHTKRRRLGVARRQYRPNPLFGSKTANEPLTVANGVFFCGAKCIVLSYSFKNMKTSWVSFSFWFPAFIFAVIFPVSTGQLPPSETRILFEIQKLLEYPVALQGWSNWTNFCYLPPSSSLKIACSGNHITELTVIGNKSSPSKAPKSVSVSSIPSRDTLSNSFSIDSFFTVLTKLSNLRVLSLVSLGLWGSFPSKVNRLSSLEVLNISSNYIYGGIPTTISKLQSLKSLVLADNLLNGTVPDFRGLAVLEELNLGQNRLGQKAPSLGETLVIVILRKNLFRSEIPSRILEFNKLQLLDISYNKFLGPIHASLFSLPAVQYLNLAYNQLSGPLSFNTTCNRNLKFVDISHNLLIGKLPSCIIPNRTVNISWNCLSSGSSKDQHTYSYCHKEAMAVKPPGDSQKQKLSIKLGLMLAIIGGVVGISVVVLLLVCAIIRNRRRLGETKYEKSTADKPSVRGSPLPNRRVPQTRLPALGLPPYRVFTLEEIEDVTRNFDPSGLAAEEPEAKTYKGWLPDGSVVLIKCFKLKQKLVPQALARHMEELPNLRHRHLVSVLGHCTFTHQDQLNPASTVFIINEYISNGSLKDCLTDWKRKDALKWPQRMGITIGIARGIQHLHTGMASGIFGNDIKIDNVLLDETLTAKISNYNVLMPLKNAENGLNVTKRSENPEKEDIFQFGAILLQVINGRPITAMSELDDLKSEIESGLGEVLRLRGVIDPSIQGSFAFDSLKTTIQIAINCLNKDPNKRPSIEDVLWNLQYSMQVQEGWTSSGNLGTFI 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35097951 35109486 + CcPI632755_05g027190.1 Cco05g2719 180347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2719 953 Pfam Leucine rich repeat 378 436 IPR001611 GO:0005515(InterPro)
Cco05g2719 953 SMART serkin_6 670 936 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2719 953 MobiDBLite consensus disorder prediction 621 640 - -
Cco05g2719 953 Pfam Protein kinase domain 690 930 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2719 953 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 259 445 - -
Cco05g2719 953 SUPERFAMILY L domain-like 290 551 - -
Cco05g2719 953 Gene3D Ribonuclease Inhibitor 259 445 IPR032675 -
Cco05g2719 953 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 518 938 IPR050647 -
Cco05g2719 953 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 754 948 - -
Cco05g2719 953 SUPERFAMILY Protein kinase-like (PK-like) 646 933 IPR011009 -
Cco05g2719 953 Gene3D Ribonuclease Inhibitor 446 563 IPR032675 -
Cco05g2719 953 ProSiteProfiles Protein kinase domain profile. 670 935 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2719 953 Gene3D Transferase(Phosphotransferase) domain 1 754 945 - -
Cco05g2719 953 Gene3D Phosphorylase Kinase; domain 1 644 741 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2719 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0732 Cco-Chr4:22478181 Cco05g2719 Cco-Chr5:35097951 2.30E-89 dispersed
Cco05g2719 Cco-Chr5:35097951 Cco11g0710 Cco-Chr11:7846117 3.10E-63 dispersed
Cco05g2719 Cco-Chr5:35097951 Cco08g0988 Cco-Chr8:21725942 1.20E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g866 . . . . . Bpe10g00858 . Bma15g00250 . Cmo18g01192 . Cma18g01168 . Car18g01077 . Cpe09g00160 . Bhi07g01594 . . Lac13g0294 . . . Cla05g02463 Cam05g2650 Cec05g2685 Cco05g2719 Clacu05g2654 Cmu05g2506 Cre05g2622 Cone13ag0974 Cone19ag0964 . . Lsi04g00446 Csa05g02427 Chy10g00981 Cme10g00438 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012316 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86881 PF00069 Pkinase 4.10E-15 CL0016 Cco PK