Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2720 ATGTCCATCCTTAGTGCTTCTCCACGCAAACCATTCAATAGAAACTCAGAAATCATTGCATTTACAGATGCCAAGTTTCTGTGGGGCATTTCGTCGAACGCCTTTAGGCTGTTGCTCCATAGACAGAGGCGGGAAAATGGAACTGTGAGAACGAAGGGAGGCCGGGCGAGTGGCGCTACTTTGGATTTTCCCTTTGCTCTTTCTGCTCCTGATCGTGTTTTGGTCACCGGGGAAGTCCCTCTCGTTAAACCGCCGGTGAGGATGTCTACTCCTGCAAGGAAGAGACTGATGAGAGATTTCAAGAGGTTGCAGCAAGATCCACCTGCTGGTATCAGTGGTGCTCCCCAAGACAATAATATCATGCTATGGAATGCTGTTATATTTGGGCCAGATGATACACCATGGGATGGAGGTACGTTTAAGCTTACTCTTCAGTTTACTGAGGATTATCCAAATAAGCCACCAACAGTCCGCTTTGTGTCTAGAATGTTCCACCCTAACATTTATGCCGATGGAAGCATTTGTTTGGACATTCTGCAAAATCAGTGGAGCCCAATCTATGATGTAGCAGCTATACTCACCTCTATTCAGTCGCTGCTGTGTGATCCCAATCCAAACTCTCCGGCTAATTCTGAAGCTGCTAGGATGTTTAGCGAGAATAAGCGTGAGTACAACAGGAGAATGGCCTTGATAAGTAATGGTGCAGTGCTTAAGAATGGACCAAAGGCCGATGCCTCAGATTGGCTGCTCTTCCATGTGCTGCGAAGGTTTGAGAGAAAGGAATCGGGATTTTCTTTTGAATTCGTTTCTGAATCCATCGAGATCAGCCAAAGTTCTCGGCTCGCCGCGCTAGGTTACGGAGATCTAGGGGTTTTGTTTACGGCGTGGGTACGGGAAAGGATTTATCGACGTGCAACGAGCTGGCGTTTTAGTTTCGTTAAGGCATGGCCGGTGAGGATGTCTACTCCTGCAAGGAAGAGACTGATGAGGGACTTTAAGAGGTTGCAACAAGATCCACCTGCCGGTATCAGTGGTGCTCCCCAAGACAATAATATCATGCTTTGGAATGCTGTTATATTTGGGCCAGATGATACACCTTGGGATGGAGGTACGTTTAAGCTGACCCTGCAGTTCACCGAGGATTATCCAAATAAGCCACCGACAGTCCGCTTTGTGTCTAGAATGTTCCACCCCAATATTTATGCTGATGGAAGCATTTGTTTGGACATTCTGCAAAATCAATGGAGCCCAATCTATGATGTAGCAGCTATACTTACCTCTATTCAGAAGTATATCACATATGGTTCACTTGTCCTCAAGGATGCCTATCATAACATATTTATGGAACTGGCTGCGCAATCGTTGCTGTGCGACCCCAATCCAAATTCTCCTGCCAATTCTGAAGCTGCTAGGATGTTTAGCGAGAACAAGCGTGAGTACAACAGGAGAGTACGCGAGATCGTGGAACAGAGTTGGACTGCTGATTAG 1488 46.64 MSILSASPRKPFNRNSEIIAFTDAKFLWGISSNAFRLLLHRQRRENGTVRTKGGRASGATLDFPFALSAPDRVLVTGEVPLVKPPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRMALISNGAVLKNGPKADASDWLLFHVLRRFERKESGFSFEFVSESIEISQSSRLAALGYGDLGVLFTAWVRERIYRRATSWRFSFVKAWPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQKYITYGSLVLKDAYHNIFMELAAQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35109934 35122787 - CcPI632755_05g027200.1 Cco05g2720 180348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2720 495 CDD UBCc 326 488 IPR000608 -
Cco05g2720 495 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 164 179 IPR023313 -
Cco05g2720 495 SMART ubc_7 326 493 - -
Cco05g2720 495 SMART ubc_7 94 237 - -
Cco05g2720 495 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 89 229 IPR050113 GO:0000209(PANTHER)|GO:0006281(PANTHER)|GO:0016574(PANTHER)|GO:0043161(PANTHER)|GO:0061631(PANTHER)
Cco05g2720 495 FunFam Ubiquitin-conjugating enzyme E2 2 88 234 - -
Cco05g2720 495 Gene3D Ubiquitin Conjugating Enzyme 318 491 IPR016135 -
Cco05g2720 495 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 396 411 IPR023313 -
Cco05g2720 495 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 323 493 IPR000608 -
Cco05g2720 495 Gene3D Ubiquitin Conjugating Enzyme 81 265 IPR016135 -
Cco05g2720 495 SUPERFAMILY UBC-like 83 230 IPR016135 -
Cco05g2720 495 SUPERFAMILY UBC-like 320 492 IPR016135 -
Cco05g2720 495 FunFam Ubiquitin-conjugating enzyme E2 2 320 491 - -
Cco05g2720 495 Pfam Ubiquitin-conjugating enzyme 95 228 IPR000608 -
Cco05g2720 495 Pfam Ubiquitin-conjugating enzyme 327 432 IPR000608 -
Cco05g2720 495 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 91 237 IPR000608 -
Cco05g2720 495 CDD UBCc 94 227 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2720 K10573 - - gmx:100784962 306.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0855 Cco-Chr2:9950774 Cco05g2720 Cco-Chr5:35109934 9.40E-28 dispersed
Cco03g0173 Cco-Chr3:1704165 Cco05g2720 Cco-Chr5:35109934 1.30E-25 dispersed
Cco05g2352 Cco-Chr5:32033972 Cco05g2720 Cco-Chr5:35109934 6.50E-26 dispersed
Cco05g2720 Cco-Chr5:35109934 Cco04g0803 Cco-Chr4:23360717 6.00E-34 dispersed
Cco05g2720 Cco-Chr5:35109934 Cco05g1028 Cco-Chr5:9041861 2.70E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g865 Blo01g00420 Blo16g01129 Bda01g02169 Bda11g01230 Bpe13g01427 . . . Cmo04g01716 Cmo18g01194 . Cma18g01169 . Car18g01078 . Cpe09g00159 Cpe01g01450 Bhi07g01596 Tan04g1110 . Lac13g0292 . . . Cla05g02464 Cam05g2651 Cec05g2686 Cco05g2720 Clacu05g2655 Cmu05g2507 Cre05g2623 Cone13ag0975 Cone19ag0965 Cone6ag0608 Cone9ag0612 Lsi04g00451 Csa05g02426 Chy10g00980 Cme10g00439 . . . Bda11g01230 . Bpe02g02356 Bma01g00086 Bma06g00663 . . . Cma04g01638 . Car04g01679 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001524 5 2 2 3 3 1 3 1 1 1 1 1 3 2 2 3 1 6 3 1 2 3 1 1 5 2 2 3 3 4 71