Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2722 | ATGGCTATGCACCGGCTACTGCTGACATTGTCCTTGCTGGCAACTACCGCATTTGCTAACATTGGAAACTTTGATGACTACTGGAAAGCACGTGCCGTGGACGCCGAACAAGCCGCCGCCGACGCCTTTGAGCCTAATCCTGAAACTGTCACCAACTCCTTCAATGCCGAAGTAGGCCAGTTATTGAGTGGAAGCAACAGTACGAGGAGGAATTTGAAGAAATATACAGGGCCATGTCGAGCTACTAATCCCATCGATCGGTGCTGGAGATGTGACCCCAATTGGGCCAAGAAGCGGAAGAAGCTAGCTGATTGTGTTCTGGGTTTTGGCCGCAAGACCATTGGTGGAAAGTTGGGTCCATACTACGTCGTGAACGACTCGTCAGATTCGGACCTCATGAACCCGAAACCTGGGACTCTTCGTCATGCTGTGATCCAAAAGGGACCTCTGTGGATCATCTTCTCTACCAACATGGCCATTAGGCTCACTCAGGAGCTCATCATGACCAGCGACAAGACCATTGATGCAAGAGGGGCTAATGTTCAGATTGCTTATGGGGCTGGCATTACTCTTCAGTACATAAAAAATGTCATCATCCACGGCCTTCGTATCCATCACATTGTTGTCGGTTCTGGCGGAATGATTAGAGACGCTGTCGACCACGTGGGTTTGAGGACCATGAGCGATGGTGACGGTATTTCCATCTTCGGTTCCTCCAACGTTTGGATTGACCATGTTTCCATGTCCAGGTGTCATGATGGTCTCATTGATGCTATCATGGGATCCACTGCCATCACGATATCCAATTGTCACTTCACCCACCATAATGAGGTGATGTTGTTTGGAGCAAGTGATGGGTACTCGAATGATCAGATAATGCAAGTGACAGTAGCATTCAACCACTTTGGTCAAGGATTGGTGCAGAGGATGCCGAGGTGCCGATGGGGCTTCTTCCACGTTGTGAACAATGACTACACTCATTGGCTTATGTATGCCATTGGTGGTAGCCAGCATCCCACCATTATCAGCCAGGGAAATCGATTCATTGCTCCTCCCAATGTATATGCTAAAGAGGTGACAAAGAGGGAGTACTCGCCGGAGGAAGTGTGGAAAAGCTGGACATGGAGATCAGAGGGAGACTTGATGATGAATGGAGCATTCTTTGTTACCTCCGGCGATCAAAGCAAGAGAAGACCCTTCTCAAGGATGGATATGATCTCCTATAAACCGGGGACATACGTTACAAGAATGACACGTTTTGCAGGCGCTCTCGCCTGCTTCGTTGGTCGCCCTTGCTAA | 1299 | 49.11 | MAMHRLLLTLSLLATTAFANIGNFDDYWKARAVDAEQAAADAFEPNPETVTNSFNAEVGQLLSGSNSTRRNLKKYTGPCRATNPIDRCWRCDPNWAKKRKKLADCVLGFGRKTIGGKLGPYYVVNDSSDSDLMNPKPGTLRHAVIQKGPLWIIFSTNMAIRLTQELIMTSDKTIDARGANVQIAYGAGITLQYIKNVIIHGLRIHHIVVGSGGMIRDAVDHVGLRTMSDGDGISIFGSSNVWIDHVSMSRCHDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDGYSNDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNVYAKEVTKREYSPEEVWKSWTWRSEGDLMMNGAFFVTSGDQSKRRPFSRMDMISYKPGTYVTRMTRFAGALACFVGRPC | 432 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 35129545 | 35131103 | - | CcPI632755_05g027220.1 | Cco05g2722 | 180350 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2722 | 432 | PRINTS | Pollen allergen Amb family signature | 105 | 122 | IPR018082 | - | |
Cco05g2722 | 432 | PRINTS | Pollen allergen Amb family signature | 309 | 328 | IPR018082 | - | |
Cco05g2722 | 432 | PRINTS | Pollen allergen Amb family signature | 373 | 397 | IPR018082 | - | |
Cco05g2722 | 432 | PRINTS | Pollen allergen Amb family signature | 403 | 426 | IPR018082 | - | |
Cco05g2722 | 432 | PRINTS | Pollen allergen Amb family signature | 165 | 181 | IPR018082 | - | |
Cco05g2722 | 432 | PRINTS | Pollen allergen Amb family signature | 129 | 154 | IPR018082 | - | |
Cco05g2722 | 432 | PRINTS | Pollen allergen Amb family signature | 331 | 350 | IPR018082 | - | |
Cco05g2722 | 432 | PRINTS | Pollen allergen Amb family signature | 229 | 250 | IPR018082 | - | |
Cco05g2722 | 432 | PANTHER | PECTATE LYASE 18-RELATED | 21 | 429 | IPR045032 | GO:0030570(InterPro) | |
Cco05g2722 | 432 | SMART | amb_all | 157 | 354 | IPR002022 | - | |
Cco05g2722 | 432 | Pfam | Pectate lyase | 170 | 348 | IPR002022 | - | |
Cco05g2722 | 432 | Gene3D | - | 82 | 425 | IPR012334 | - | |
Cco05g2722 | 432 | Pfam | Pectate lyase, N terminus | 20 | 72 | IPR007524 | GO:0030570(InterPro) | |
Cco05g2722 | 432 | SUPERFAMILY | Pectin lyase-like | 83 | 423 | IPR011050 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2722 | Cco-Chr5:35129545 | Cco08g1926 | Cco-Chr8:30201351 | 1.20E-131 | dispersed | |
Cco08g1046 | Cco-Chr8:22251988 | Cco05g2722 | Cco-Chr5:35129545 | 1.20E-190 | transposed | |
Cco01g1844 | Cco-Chr1:31004490 | Cco05g2722 | Cco-Chr5:35129545 | 2.10E-63 | wgd | |
Cco01g1579 | Cco-Chr1:28487067 | Cco05g2722 | Cco-Chr5:35129545 | 1.30E-176 | wgd | |
Cco10g1473 | Cco-Chr10:27827807 | Cco05g2722 | Cco-Chr5:35129545 | 6.80E-191 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2722 | K01728 | - | csv:101206497 | 818.92 |