Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2722 ATGGCTATGCACCGGCTACTGCTGACATTGTCCTTGCTGGCAACTACCGCATTTGCTAACATTGGAAACTTTGATGACTACTGGAAAGCACGTGCCGTGGACGCCGAACAAGCCGCCGCCGACGCCTTTGAGCCTAATCCTGAAACTGTCACCAACTCCTTCAATGCCGAAGTAGGCCAGTTATTGAGTGGAAGCAACAGTACGAGGAGGAATTTGAAGAAATATACAGGGCCATGTCGAGCTACTAATCCCATCGATCGGTGCTGGAGATGTGACCCCAATTGGGCCAAGAAGCGGAAGAAGCTAGCTGATTGTGTTCTGGGTTTTGGCCGCAAGACCATTGGTGGAAAGTTGGGTCCATACTACGTCGTGAACGACTCGTCAGATTCGGACCTCATGAACCCGAAACCTGGGACTCTTCGTCATGCTGTGATCCAAAAGGGACCTCTGTGGATCATCTTCTCTACCAACATGGCCATTAGGCTCACTCAGGAGCTCATCATGACCAGCGACAAGACCATTGATGCAAGAGGGGCTAATGTTCAGATTGCTTATGGGGCTGGCATTACTCTTCAGTACATAAAAAATGTCATCATCCACGGCCTTCGTATCCATCACATTGTTGTCGGTTCTGGCGGAATGATTAGAGACGCTGTCGACCACGTGGGTTTGAGGACCATGAGCGATGGTGACGGTATTTCCATCTTCGGTTCCTCCAACGTTTGGATTGACCATGTTTCCATGTCCAGGTGTCATGATGGTCTCATTGATGCTATCATGGGATCCACTGCCATCACGATATCCAATTGTCACTTCACCCACCATAATGAGGTGATGTTGTTTGGAGCAAGTGATGGGTACTCGAATGATCAGATAATGCAAGTGACAGTAGCATTCAACCACTTTGGTCAAGGATTGGTGCAGAGGATGCCGAGGTGCCGATGGGGCTTCTTCCACGTTGTGAACAATGACTACACTCATTGGCTTATGTATGCCATTGGTGGTAGCCAGCATCCCACCATTATCAGCCAGGGAAATCGATTCATTGCTCCTCCCAATGTATATGCTAAAGAGGTGACAAAGAGGGAGTACTCGCCGGAGGAAGTGTGGAAAAGCTGGACATGGAGATCAGAGGGAGACTTGATGATGAATGGAGCATTCTTTGTTACCTCCGGCGATCAAAGCAAGAGAAGACCCTTCTCAAGGATGGATATGATCTCCTATAAACCGGGGACATACGTTACAAGAATGACACGTTTTGCAGGCGCTCTCGCCTGCTTCGTTGGTCGCCCTTGCTAA 1299 49.11 MAMHRLLLTLSLLATTAFANIGNFDDYWKARAVDAEQAAADAFEPNPETVTNSFNAEVGQLLSGSNSTRRNLKKYTGPCRATNPIDRCWRCDPNWAKKRKKLADCVLGFGRKTIGGKLGPYYVVNDSSDSDLMNPKPGTLRHAVIQKGPLWIIFSTNMAIRLTQELIMTSDKTIDARGANVQIAYGAGITLQYIKNVIIHGLRIHHIVVGSGGMIRDAVDHVGLRTMSDGDGISIFGSSNVWIDHVSMSRCHDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDGYSNDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNVYAKEVTKREYSPEEVWKSWTWRSEGDLMMNGAFFVTSGDQSKRRPFSRMDMISYKPGTYVTRMTRFAGALACFVGRPC 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35129545 35131103 - CcPI632755_05g027220.1 Cco05g2722 180350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2722 432 PRINTS Pollen allergen Amb family signature 105 122 IPR018082 -
Cco05g2722 432 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Cco05g2722 432 PRINTS Pollen allergen Amb family signature 373 397 IPR018082 -
Cco05g2722 432 PRINTS Pollen allergen Amb family signature 403 426 IPR018082 -
Cco05g2722 432 PRINTS Pollen allergen Amb family signature 165 181 IPR018082 -
Cco05g2722 432 PRINTS Pollen allergen Amb family signature 129 154 IPR018082 -
Cco05g2722 432 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Cco05g2722 432 PRINTS Pollen allergen Amb family signature 229 250 IPR018082 -
Cco05g2722 432 PANTHER PECTATE LYASE 18-RELATED 21 429 IPR045032 GO:0030570(InterPro)
Cco05g2722 432 SMART amb_all 157 354 IPR002022 -
Cco05g2722 432 Pfam Pectate lyase 170 348 IPR002022 -
Cco05g2722 432 Gene3D - 82 425 IPR012334 -
Cco05g2722 432 Pfam Pectate lyase, N terminus 20 72 IPR007524 GO:0030570(InterPro)
Cco05g2722 432 SUPERFAMILY Pectin lyase-like 83 423 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2722 Cco-Chr5:35129545 Cco08g1926 Cco-Chr8:30201351 1.20E-131 dispersed
Cco08g1046 Cco-Chr8:22251988 Cco05g2722 Cco-Chr5:35129545 1.20E-190 transposed
Cco01g1844 Cco-Chr1:31004490 Cco05g2722 Cco-Chr5:35129545 2.10E-63 wgd
Cco01g1579 Cco-Chr1:28487067 Cco05g2722 Cco-Chr5:35129545 1.30E-176 wgd
Cco10g1473 Cco-Chr10:27827807 Cco05g2722 Cco-Chr5:35129545 6.80E-191 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2722 K01728 - csv:101206497 818.92