Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2725 ATGGAGGTAATCGCTGAAGATGGGAAAGTTGAGTCTCGGGAAGTGAGGGAATCGAAGAGGAAGAAGAAGCAGAAGAACAACAAGGAACAAGTTGAAACTGTGGAAGAGGAGACTGGTTGTTGGATTGCTCTGAGGATTTTTGGTAGCTGCATTTCTTCGAGATCCAAAGTTGATAGTTCGATAAGTGGGACTAGTATCAACTATGCTGAAAGCAAGTCTACGGCTGATTCAAGTAGAGACCAACCAACACCTAGAGACATATCTTCAACAAACACAAGTATGAGTAATGCAGAGAGTAATTCATCAACTTCCAAATTAGAAGAGGAACTTAAAATTTCTCCTCATCTACGGAAATTTTCATTCAATGATCTTAAGTTGGCTACAAGGAACTTCAGACCCGAGAGTCTTCTTGGTGAGGGTGGTTTTGGTTGTGTTTTTAAGGGTTGGGTTGAAGAAAATGGAACTGCTCCAGTTAAACCTGGCACAGGACTCACTGTTGCTGTTAAAACCCTCAACCATGATGGTCTTCAGGGCCACAAAGAATGGATGGCTGAAGTGAATTTTCTCAGTGATCTCAAACATCCCAACTTGGTCAGACTTATTGGTTACTGCAATGAAGATGATCAAAGACTGCTTGTATATGAGTTCATGCCTAGAGGAAGCCTGGAGAATCATCTTTTCCGGAGATCTCTACCCCTTCCGTGGTCTATTAGGATGAAAATTGCACTAGGTGCTGCCAAGGGTCTTGCTTTTCTTCACGAGGAAGCAAAAAGACCTGTGATATATCGTGATTTTAAAACATCCAACATCCTATTAGATGCTGAATACAATGCCAAGCTTTCTGATTTTGGACTTGCAAAAGATGGACCCGATGGAGATAAAACCCATGTCTCTACTCGTGTGATGGGAACATATGGCTATGCAGCTCCAGAATACGTTATGACTGGACATCTTACATCCAGGAGTGATGTTTACAGTTTTGGGGTGGTTCTTCTCGAAATGTTAACTGGCAGAAGATCCATGGATAAAAACCGTCCTAATGGTGAGCATAACCTTGTTGAATGGGCACGGCCATACCTCGGAGAGAAAAAGAGATTCTATCGCTTGATAGATCCTAGGCTTGAAGGTCATTTCTCAATAAAAGGTGCCCAAAAAGCAGTACAATTAGCTGCTCAATGCCTTAGCCGAGATCAAAAGGTCAGACCTTTGATGAGTGAAGTTGTTGAAGCCTTGAAGCCTCTCCCAAACCTCAAGGATATGGCAAGTTCATCTTATTATTTTCAGACAATGCAAGCTGACCGCATACGATCCAGCCCAATGGCGAGAAACGGCTACCACACAGCAGCTGGACCGGTTCCAAAGAACGGGCAGCAACTACGCAGCTATTCAGTCACGAATGGTTCTCATGCTTCTCCATATCATCATCAGCAACCCCATCCATCTCCGAAACCCAATGTCAAAGCCTAA 1467 43.35 MEVIAEDGKVESREVRESKRKKKQKNNKEQVETVEEETGCWIALRIFGSCISSRSKVDSSISGTSINYAESKSTADSSRDQPTPRDISSTNTSMSNAESNSSTSKLEEELKISPHLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLSDLKHPNLVRLIGYCNEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAKRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPDGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPYLGEKKRFYRLIDPRLEGHFSIKGAQKAVQLAAQCLSRDQKVRPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRIRSSPMARNGYHTAAGPVPKNGQQLRSYSVTNGSHASPYHHQQPHPSPKPNVKA 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35145913 35149294 - CcPI632755_05g027250.1 Cco05g2725 180353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2725 488 Gene3D Phosphorylase Kinase; domain 1 89 216 - -
Cco05g2725 488 ProSitePatterns Protein kinases ATP-binding region signature. 137 169 IPR017441 GO:0005524(InterPro)
Cco05g2725 488 SMART serkin_6 131 414 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2725 488 SUPERFAMILY Protein kinase-like (PK-like) 107 411 IPR011009 -
Cco05g2725 488 PANTHER OS01G0588500 PROTEIN-RELATED 97 415 IPR050823 -
Cco05g2725 488 MobiDBLite consensus disorder prediction 69 103 - -
Cco05g2725 488 Pfam Protein tyrosine and serine/threonine kinase 135 411 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g2725 488 Gene3D Transferase(Phosphotransferase) domain 1 217 433 - -
Cco05g2725 488 FunFam Probable serine/threonine-protein kinase PBL8 217 432 - -
Cco05g2725 488 CDD STKc_IRAK 137 414 - -
Cco05g2725 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g2725 488 FunFam Serine/threonine-protein kinase BIK1 98 216 - -
Cco05g2725 488 MobiDBLite consensus disorder prediction 454 475 - -
Cco05g2725 488 ProSiteProfiles Protein kinase domain profile. 131 417 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2725 488 MobiDBLite consensus disorder prediction 69 107 - -
Cco05g2725 488 MobiDBLite consensus disorder prediction 441 488 - -
Cco05g2725 488 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0815 Cco-Chr4:23468630 Cco05g2725 Cco-Chr5:35145913 4.70E-56 dispersed
Cco05g2725 Cco-Chr5:35145913 Cco06g1321 Cco-Chr6:23481554 2.00E-138 dispersed
Cco05g2725 Cco-Chr5:35145913 Cco08g1040 Cco-Chr8:22218677 5.40E-112 wgd
Cco05g2725 Cco-Chr5:35145913 Cco09g2041 Cco-Chr9:34783914 1.10E-189 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86882 PF07714 PK_Tyr_Ser-Thr 1.20E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2725 - - - 0.0