Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2730 ATGGATTCTGAAACAACCCGTTTTCTAGCAAAAGCTGAAGCTTCTTCTCTGCCCTGTTTTTGGGTGCCTGATTCTTGCTGTTCCATGAAGGGAGAAGGGAACCAAGGTGGAAAGAAAAGAAGGCTCACAGTGGATCAAGTTTGTTTGCTTGAGAAGAATTTTAATGATGAGAACAAGCTTGAACATGACAGGAAAGTTCAAATTGCTGAGGAGATTGGTTTGCGGCCTCGCCAAGTTGCAGTTTGGTTTCAGAATCGAAGGGCTCGATCCAAGACTAGAAGAATTGAGAAAGATTATGAATCCTTGAATGCTGAATATGATAAGCTTAAGAATGATTTTGACAGTCTTCTCAAGCTGAATCAAGAACTCAAAGCAGAGGTTGATCAATTGAGAGAAAAATGGGTTGCTAGCGAGAAGATGAAGAATCCTTTTGAATCAGTTGGAGTTGAAGCCATGGATTCATCAGTTACAGAACTTGGAAAAGCGAATACAAAGACAATGGTTGAAATTTTGTACAAGGTGCAAAAAGAGTCATCCAGACAGGAAGAAGGTAGCCGAAGTTCAAGCAAAAGTGATGGTTTTTATTCTGAGAGCCCCACCAGGGAAAACCAATCGAAGTCAGGCAATTTCTTGCAAGATGAAGAAGACGAATTAGGCTACTTAGGAAAACTAGAAGATGAACTTTCTGCTAATGAGCTCATGGATTCCTTTAACACTTTCAGTAGTATAGTTGAAAATCAATCTTTCTGTTTCTGGTCTTACTGA 765 39.87 MDSETTRFLAKAEASSLPCFWVPDSCCSMKGEGNQGGKKRRLTVDQVCLLEKNFNDENKLEHDRKVQIAEEIGLRPRQVAVWFQNRRARSKTRRIEKDYESLNAEYDKLKNDFDSLLKLNQELKAEVDQLREKWVASEKMKNPFESVGVEAMDSSVTELGKANTKTMVEILYKVQKESSRQEEGSRSSSKSDGFYSESPTRENQSKSGNFLQDEEDELGYLGKLEDELSANELMDSFNTFSSIVENQSFCFWSY 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35195052 35196362 + CcPI632755_05g027300.1 Cco05g2730 180358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2730 254 CDD homeodomain 38 91 IPR001356 GO:0003677(InterPro)
Cco05g2730 254 MobiDBLite consensus disorder prediction 188 207 - -
Cco05g2730 254 SUPERFAMILY Homeodomain-like 18 93 IPR009057 -
Cco05g2730 254 PRINTS Lambda-repressor HTH signature 73 89 IPR000047 GO:0003677(InterPro)
Cco05g2730 254 PRINTS Lambda-repressor HTH signature 64 73 IPR000047 GO:0003677(InterPro)
Cco05g2730 254 ProSitePatterns 'Homeobox' domain signature. 68 91 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco05g2730 254 Pfam Homeodomain 38 91 IPR001356 GO:0003677(InterPro)
Cco05g2730 254 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 32 201 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cco05g2730 254 FunFam homeobox-leucine zipper protein ATHB-6-like 41 87 - -
Cco05g2730 254 Coils Coil 85 140 - -
Cco05g2730 254 SMART HOX_1 36 97 IPR001356 GO:0003677(InterPro)
Cco05g2730 254 Pfam Homeobox associated leucine zipper 94 133 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2730 254 Gene3D - 31 100 - -
Cco05g2730 254 ProSiteProfiles 'Homeobox' domain profile. 33 93 IPR001356 GO:0003677(InterPro)
Cco05g2730 254 MobiDBLite consensus disorder prediction 179 210 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2730 K09338 - - csv:101204430 400.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2730 Cco-Chr5:35195052 Cco10g1420 Cco-Chr10:27286663 2.30E-21 dispersed
Cco01g1575 Cco-Chr1:28463235 Cco05g2730 Cco-Chr5:35195052 9.80E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g846 . Blo16g01135 . Bda11g01236 Bpe13g00467 . . . . . . . . . Sed04g0677 . . Bhi07g01613 Tan04g1126 Cmetu10g1215 Lac13g0276 Hepe10g1711 . . Cla05g02477 Cam05g2661 Cec05g2695 Cco05g2730 Clacu05g2663 Cmu05g2517 Cre05g2632 . . Cone6ag0614 Cone9ag0617 Lsi04g00464 Csa05g02414 Chy10g00972 Cme10g00452 . . . Bda11g01236 . . Bma01g00080 Bma06g00658 . . . . . Car04g01668 Car15g00313 Cpe13g00941 . . . . . . . . . . . . . . . . . Chy09g00265 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013330 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 0 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59402 PF00046 Homeodomain 3.40E-15 CL0123 Cco TF