Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2743 ATGCCTTCTCCATCTCCTTCTTTTACTGTTTCCGCCATTGTTGTCTTCTTCCTTCATCTTTTTCCTCTCTTTCGTGTTGAGTCTTTGAGCTCTTCTTGTCCACCTTTCTCTTCCCAACTTCGTTTCCCTTTTTCCTCTGTTTCTGGTCATGGCCATCCTTCTTTTCAAGTGCGTTGCTCTTCTCCCCACTCTGTTATATCCATTAATGGGATTCCTTTTTCTCTGTTAAGTTTCAATATCACCTCCACCACTCTCCTTCTTTCCCCTCTTGCACTCAATGTCACTCCCACTCTCAAAGAATCGAATCACTCCTGTTTTTCTCTTCGTTCCTCCTCTATTCCCAGCCGTTCGATTGATTTCTCTGGCTCACCGTTTCGAATCTCAGATGGGTATTGTTCTAGACTCTCTCTTCTTCGCCCCTGTTCGCCTCCGCATCTACCCAATTGCAGCCATTGCCCTTGGGAGTGTAATCTCATCAAGAAACCAGTTAATTTGCTCCATGGATGCGGCGTCGAGCGTCAGTCTGTGTCGGAGCAAGGTTGTCAGGAGGAGGTTTTGGAGTATTTGGACAGAATTCTTAGATTGGGGTTTGAAGTGGAGTGGGATAAAGATCAGGACCCTTACTTTATGAAATGTAATGATTGTGAAGCTAAAAAAGGTGTTTGTGGCTTCAATTCTTCAGACCCAGACAGGCAATTCATTTGCTACTATACTCGAACTCGATACTCATACCCTAATAGAATCGCGATTTTGTCCTCCGTCTTCACTTTGATGTGCTTGTTATTGGTTTTTGCGGTAATGTTGGCCTTTTTCAGGTCGAGATGGTTGAGATCCCTCGCTATTGAAGTAGACCCAACAGCTCAGTTCCTCAGTCGCCATCGTTCACCGAATCTTCTCCCACCGGTTTTCCCCTACGAAGAACTCGAATCCTCAACCAATCGATTCGACCCAAAGAGGAAACTAGGCGACGGTGGATTTGGGTCTGTTTATTTGGGTCAGCTCAACGATGGTCGATTAGTCGCCGTCAAGTATCTCCACAAGCACCACGCCACCGCCGCCGCCCCCTCCGGCAAGGCTTTCTTCACCAAATCGTTCTGTAACGAAATCTTGATTCTTTCTTCAATTAATCACCCAAATCTCGTTAGGTTACATGGGTATTGTAGTGATCCACGAGGGCTTATTCTAGTCTATGATTATGTCCCAAATGGGACACTCGCCGATCATCTCCATGGCCCTAAATGCTCGTACCGGAAGGGATCTCTGTCCTGGCAAGTGAGGATTGACATCGCTCTGCAAATCGCGATGGCTATGGAGTATTTGCATTTCTCTGTGGTTCCGCCGATTGTTCACAGAGACATTACGTCTTCCAACATTTTTGTGGAGAAAGATATGAGAATCAAAGTTGGGGATTTTGGGCTTTCAAGGCTGTTGGTTTTCTCAGATACGACGTCGTCTTCATCTGGGTATGTCTGCACCGGACCTCAGGGGACGCCCGGTTACTTGGATCCGGATTACCACCGGTCCTTCCGGTTGACGGAGAAAAGTGACGTGTACAGCTTTGGAGTGGTGTTATTGGAGCTGATTTCTGGTCTGAAAGCGGTGGATCAGAGTCGAGAGAGAAGAGAAATGGCGCTGGCGGATCTGGTAGTGTCCAAGATCCAAATGGGTCAGCTTCATCAGGTTGTGGACTCTGTTTTGGGCGTTGACGGCGAGGTAATCGACGGCGTTGAGGCCGTGGCGGAGCTGGCATTTCGATGCGTTGCGGCGGACAAAGACGACCGCCCAGACGCCAAGGAAATCGTGGAGGAACTCCGGCGGATTAGGAACGGCACACGTGGAGGGGTCCGGTCGTCGATTTCAAACGGGAGTGCTGACGTGGCTAGAAGTTGA 1890 48.41 MPSPSPSFTVSAIVVFFLHLFPLFRVESLSSSCPPFSSQLRFPFSSVSGHGHPSFQVRCSSPHSVISINGIPFSLLSFNITSTTLLLSPLALNVTPTLKESNHSCFSLRSSSIPSRSIDFSGSPFRISDGYCSRLSLLRPCSPPHLPNCSHCPWECNLIKKPVNLLHGCGVERQSVSEQGCQEEVLEYLDRILRLGFEVEWDKDQDPYFMKCNDCEAKKGVCGFNSSDPDRQFICYYTRTRYSYPNRIAILSSVFTLMCLLLVFAVMLAFFRSRWLRSLAIEVDPTAQFLSRHRSPNLLPPVFPYEELESSTNRFDPKRKLGDGGFGSVYLGQLNDGRLVAVKYLHKHHATAAAPSGKAFFTKSFCNEILILSSINHPNLVRLHGYCSDPRGLILVYDYVPNGTLADHLHGPKCSYRKGSLSWQVRIDIALQIAMAMEYLHFSVVPPIVHRDITSSNIFVEKDMRIKVGDFGLSRLLVFSDTTSSSSGYVCTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELISGLKAVDQSRERREMALADLVVSKIQMGQLHQVVDSVLGVDGEVIDGVEAVAELAFRCVAADKDDRPDAKEIVEELRRIRNGTRGGVRSSISNGSADVARS 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35294620 35296509 + CcPI632755_05g027430.1 Cco05g2743 180371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2743 629 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524(InterPro)
Cco05g2743 629 Pfam Protein kinase domain 317 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2743 629 Gene3D Transferase(Phosphotransferase) domain 1 400 619 - -
Cco05g2743 629 Pfam Wall-associated receptor kinase C-terminal 177 238 IPR032872 -
Cco05g2743 629 SUPERFAMILY Protein kinase-like (PK-like) 295 604 IPR011009 -
Cco05g2743 629 ProSiteProfiles Protein kinase domain profile. 315 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2743 629 ProSitePatterns Tyrosine protein kinases specific active-site signature. 448 460 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g2743 629 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 31 613 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Cco05g2743 629 CDD STKc_IRAK 321 607 - -
Cco05g2743 629 FunFam Putative serine/threonine-protein kinase At1g18390 family 291 399 - -
Cco05g2743 629 Gene3D Phosphorylase Kinase; domain 1 290 399 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2743 Cco-Chr5:35294620 Cco07g1553 Cco-Chr7:29574370 8.30E-73 dispersed
Cco05g2743 Cco-Chr5:35294620 Cco11g0765 Cco-Chr11:8620899 3.30E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86883 PF00069 Pkinase 6.40E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2743 - - - 0.0