Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2747 ATGGATTGTCTTCACCTGCAATGGATTGCTGTTATGATCTCCATTATGAGCCTTTCTGAAGCTTGCCATCCTGCGGATTGGAAGGGTCTAACCAGTTTCAAGTCTGGAATTTTCCTTGACACTTCTGGTAGGCTTGCAAAGTGGGTGGGACGAAACTGTTGTGATTGGGAAGGAGTTTCTTGTCACAACATTACAGGCAGAGTCAAAGAAATCAATTTGCCAGGCTTCATATCAACTGGTGATCTCCCCTTTCAGTCTGAGATGAGAGGTTTTCTTTCACCTTCAATAACACTGCTTAATGCCGTTGAGATTATTGATCTTGGAGGACTTCTTGGCCTTGGTGGAAAAATCCCTTCGTTTATCGGTTTACGGCTTCGTAGCCTGCGAAAGCTCTATCTTTATGGCAACAAGCTGAGAGGTCCACTTCCAGAAAGTGTAGGTAAGCTTCTGAAGCTTGAAGAACTTGCTGTGCATGATAATAAGCTATCTGGTTCACTCCCCGCATGTCTTGGCAGTCTCAAGACTCTCCATAGCCTTCTTCTATATGGAAATCGGTTTTCGGGTGCAATACCAGATTCATTTGCAGATCTTACTAACTTAGTTCAGATGGATTTACACAGCAACGCATTGGTTGGTCACATACCTGAGAGAATTGGTCAGTTGCAGATGTTGAAAGAGCTTGATCTTTCAAACAACTTCTTGAGCGGGAAAATTCCCCTTTCCTTAAACAATTTGACAAGTCTTTCAGTTTTGTATTTGGATAATAACAATCTGGAGGGACCAATGCCATTCGCATCAGTTTCTGGTCAGATCTCTTCTTCTTCTTCTCTTGCTTTTCTTAGACTGAATGACAACCGTTTAAGTGGTGCTATCCCTTCTAGTTTTGGAGAGCTTGTCTTTCTCAAAAGAGCTTCACTTTCAAATAACAAACTTGAGGGAATAATTCCTCCTTCTTTAGGAAGGTTATCATCTTTGTCAGAGTTGTATCTCGACCGAAACTGCTTCTCCGGCCGAATACCAGAATCATTTGGACACCTCTCTCAGCTCATTCTCCTGAATCTCTCTCACAATTCCATCAAAGGGCCAATACCTGAGATGTCATCTCTTCGAAATATTCAAACCATTGATCTTTCTTACAACCTTCTAGACATGTCTTCAATTCCCCAGTGGCTATTAAGACTACCATCTCTTTCAAAAATCTATCTTGCAGGGTGTGGAATCCATGGTCAAATTCCAGAGTTCTTGCGAACAACTCCAAGCCCAATACAGGAACTAGATCTTTCCCTCAACCATCTTACTGGGAAAATTCCAGAATGGATTGGAAGCCTCACTCAGCTCTATTCACTAAAACTATCAGAAAACTCACTAGTCTCTGAGATTCCCAATTCCATTACAAATTTACTGGACTTGCGTGTGCTCGATCTTCATTCAAACAAGTTAACAGGCAATATACAGCAGATCTTCAAGATAGGACACAGATTTCCAGACGATTCTTTAACATACATTGATATTTCAGACAATAACTTCTCTGGGGACTTTGATCAAACAGATGTCGGAAAACAACCTGCGATTAAGTTTCTGAATTTGTCGCATAACAATCTGAAAGGAAGACTGCCCACTTCAATCGGAGCATTAAGATCAATACGAAGCCTGGATTTGAGCCGTAACAATTTGGGCTTCGACTTGCCAGAGGCCATAGTGAATGCAAACCAATTAGAGACGCTAAAGCTGCAAAGAAACCATTTTACAGGAAAAATACCAAAAGGGTTTCTGAAGTTGCGGAAGTTAAAGGAATTGGATCTGTCGAATAATTTGTTAGTGGGAGAAATTCCAGCGGGAAAGCCGCTGAGCGATTTTCCTCGAAGCGCTTACATGGGTAACAAAGGTTTGTGTGGAAAGCCTTTAAGCCCATGTAAGCTTTGA 1923 41.65 MDCLHLQWIAVMISIMSLSEACHPADWKGLTSFKSGIFLDTSGRLAKWVGRNCCDWEGVSCHNITGRVKEINLPGFISTGDLPFQSEMRGFLSPSITLLNAVEIIDLGGLLGLGGKIPSFIGLRLRSLRKLYLYGNKLRGPLPESVGKLLKLEELAVHDNKLSGSLPACLGSLKTLHSLLLYGNRFSGAIPDSFADLTNLVQMDLHSNALVGHIPERIGQLQMLKELDLSNNFLSGKIPLSLNNLTSLSVLYLDNNNLEGPMPFASVSGQISSSSSLAFLRLNDNRLSGAIPSSFGELVFLKRASLSNNKLEGIIPPSLGRLSSLSELYLDRNCFSGRIPESFGHLSQLILLNLSHNSIKGPIPEMSSLRNIQTIDLSYNLLDMSSIPQWLLRLPSLSKIYLAGCGIHGQIPEFLRTTPSPIQELDLSLNHLTGKIPEWIGSLTQLYSLKLSENSLVSEIPNSITNLLDLRVLDLHSNKLTGNIQQIFKIGHRFPDDSLTYIDISDNNFSGDFDQTDVGKQPAIKFLNLSHNNLKGRLPTSIGALRSIRSLDLSRNNLGFDLPEAIVNANQLETLKLQRNHFTGKIPKGFLKLRKLKELDLSNNLLVGEIPAGKPLSDFPRSAYMGNKGLCGKPLSPCKL 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35317091 35319013 + CcPI632755_05g027470.1 Cco05g2747 180375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2747 640 SUPERFAMILY RNI-like 388 639 - -
Cco05g2747 640 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Cco05g2747 640 SMART LRR_typ_2 593 615 IPR003591 -
Cco05g2747 640 SMART LRR_typ_2 369 394 IPR003591 -
Cco05g2747 640 SMART LRR_typ_2 443 467 IPR003591 -
Cco05g2747 640 SMART LRR_typ_2 545 569 IPR003591 -
Cco05g2747 640 SMART LRR_typ_2 125 148 IPR003591 -
Cco05g2747 640 SMART LRR_typ_2 322 345 IPR003591 -
Cco05g2747 640 SMART LRR_typ_2 149 173 IPR003591 -
Cco05g2747 640 SMART LRR_typ_2 197 221 IPR003591 -
Cco05g2747 640 SMART LRR_typ_2 245 274 IPR003591 -
Cco05g2747 640 SUPERFAMILY L domain-like 51 382 - -
Cco05g2747 640 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 386 638 IPR051716 -
Cco05g2747 640 FunFam Piriformospora indica-insensitive protein 2 267 364 - -
Cco05g2747 640 PRINTS Leucine-rich repeat signature 593 606 - -
Cco05g2747 640 PRINTS Leucine-rich repeat signature 224 237 - -
Cco05g2747 640 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 81 266 - -
Cco05g2747 640 Gene3D Ribonuclease Inhibitor 89 368 IPR032675 -
Cco05g2747 640 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 365 640 - -
Cco05g2747 640 Gene3D Ribonuclease Inhibitor 20 88 IPR032675 -
Cco05g2747 640 Gene3D Ribonuclease Inhibitor 369 640 IPR032675 -
Cco05g2747 640 Pfam Leucine rich repeat 276 333 IPR001611 GO:0005515(InterPro)
Cco05g2747 640 Pfam Leucine rich repeat 422 480 IPR001611 GO:0005515(InterPro)
Cco05g2747 640 Pfam Leucine rich repeat 498 558 IPR001611 GO:0005515(InterPro)
Cco05g2747 640 Pfam Leucine Rich Repeat 224 245 IPR001611 GO:0005515(InterPro)
Cco05g2747 640 Pfam Leucine Rich Repeat 127 149 IPR001611 GO:0005515(InterPro)
Cco05g2747 640 Pfam Leucine Rich Repeat 595 612 IPR001611 GO:0005515(InterPro)
Cco05g2747 640 Pfam Leucine Rich Repeat 176 197 IPR001611 GO:0005515(InterPro)
Cco05g2747 640 Pfam Leucine Rich Repeat 571 593 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2747 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2747 Cco-Chr5:35317091 Cco10g1697 Cco-Chr10:30519025 1.20E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g818 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02493 Cam05g2678 Cec05g2712 Cco05g2747 Clacu05g2680 Cmu05g2535 Cre05g2650 . . . . Lsi04g00493 Csa05g02392 Chy10g00954 Cme10g00472 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014248 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 23