Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2748 ATGGGTGCCTGTGTTTCCACGCCGGAGGGCTGCGTCGGAGGCAAATTTAAGAAGTCTTCCAAGAGGAAGAACCGCCGCAGGCGGAGGAAAGGTTCCAAAACCACCGTGTTCTCTGCTCTCTCCGATGGATCGCACCGCTCCGAGCCGATTGACCACTGCTCATTTTCCAATCCCACTTTCCAAGGAAGTTCTGATGAAGCCTGGTTTGATACATTTGGAAAGTTCGAATCGGATTGTGATGAAGACTACCAAAGTCTTCCTGATGACATACAGTCAATTAATAGCTTTGAGGGTGCGTCAACATCGAGCATTTCATCTTTTGGAGATGCTAATCATGGAGATCATAATGTGAATCGACATAGCGCAACCCAGGATCAGATTCATAGACCAGGAAATTCAGCAAGAGTACATTCTGTGAGCGGCTCTGAGAGTCAAGTTGCTAGGGATTCACATTCTCAGGCCATGAATCCAGATGATGCAGAACCCCAACTTAAGGGTTATGGACACTCGAGTGAGGCAAATGAACCGGTATTCATCGACGAGATCTCCTCTACCGCTGGTGAAAGTTCTGCCAAAGGCGATGGAATATTGGACAATTGTGGGATTTTACCAAGCAATTGCTTGCCTTGTCTTGCATCAACAATAAACTCTGTTGAAAAGAGAAAATCACTAAGTTCTAGCCCTTCAAGTGGGCTTAAAAAGGCAGCCTTGAAACTGTCATTCAAATGGAAAGAAGGAAATCCCAATGCTGCTTTATTTTCATCGAAAGCGCTTCTACAAAGACCTATAGCAGGTTCTCAAGTACCCTTTTGCCCAGCTGAGAAGAAAATGCTAGATTGTTGGTCACATATTGAGCCTGATAGTTTTAAAGTTAGGGGAGTAAACTATGCAAAGGACAAAAAGAAAGAATTTGCTCCCAGTCATTCTGCTTACTATCCCTTTGGAGTTGATGTGTTCTTGTCACATCGAAAAGTGGATCACATCGCTCGATTTGTCGAACTGCCTGTAGCTACTCATTCCGGAACACTTCCACCTATCCTTGTTGTTAATGTTCAGATTCCATTGTATCCAGCGGCAATTTTTCAAGGAGAAACCGACGGAGAAGGAATGAGTATCGTCTTGTACTTTAAGCTTTCTGAAGCATATGCAGAGGAACTTACATCTCATTTTCAAGAAAATATCAGGAAGCTGATTGATGATGAAGTTGAAAGGGTGAAAGGTTTTCCAGTAGACAATGTAGTACCATTTAGGGAAAGATTGAAAATTTTGGGGCGTGTTGCCAATGTGGAGGATCTTCCAATGAGCGCCGCAGAGCGAAAGCTTATGCAGGCTTACAACGAGAAGCCCGTCCTTTCCCGTCCTCAACACGAATTTTACTCGGGAGAAAACTACTTGGAAATCGACTTGGATATGCACAGATTTAGTTACATATCAAGGAAAGGTTTTGAAGCATTCCTTGATAGACTCAAGAGCTGCATTTTGGATGTTGGCCTAACAATTCAGGGGAACAAACCTGAAGAATTGCCAGAGGAAATCTTATGTTGTATTAGACTAAATGGAATTGATTACGTAAATTACCAGCAGTTGGGCATGGGTCAAGAGATCCTGTAA 1611 43.39 MGACVSTPEGCVGGKFKKSSKRKNRRRRRKGSKTTVFSALSDGSHRSEPIDHCSFSNPTFQGSSDEAWFDTFGKFESDCDEDYQSLPDDIQSINSFEGASTSSISSFGDANHGDHNVNRHSATQDQIHRPGNSARVHSVSGSESQVARDSHSQAMNPDDAEPQLKGYGHSSEANEPVFIDEISSTAGESSAKGDGILDNCGILPSNCLPCLASTINSVEKRKSLSSSPSSGLKKAALKLSFKWKEGNPNAALFSSKALLQRPIAGSQVPFCPAEKKMLDCWSHIEPDSFKVRGVNYAKDKKKEFAPSHSAYYPFGVDVFLSHRKVDHIARFVELPVATHSGTLPPILVVNVQIPLYPAAIFQGETDGEGMSIVLYFKLSEAYAEELTSHFQENIRKLIDDEVERVKGFPVDNVVPFRERLKILGRVANVEDLPMSAAERKLMQAYNEKPVLSRPQHEFYSGENYLEIDLDMHRFSYISRKGFEAFLDRLKSCILDVGLTIQGNKPEELPEEILCCIRLNGIDYVNYQQLGMGQEIL 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35319227 35322412 - CcPI632755_05g027480.1 Cco05g2748 180376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2748 536 MobiDBLite consensus disorder prediction 122 165 - -
Cco05g2748 536 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 281 522 IPR009769 -
Cco05g2748 536 PANTHER CW14 PROTEIN 1 529 - -
Cco05g2748 536 MobiDBLite consensus disorder prediction 15 49 - -
Cco05g2748 536 MobiDBLite consensus disorder prediction 17 33 - -
Cco05g2748 536 MobiDBLite consensus disorder prediction 123 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2748 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2388 Cco-Chr9:38059670 Cco05g2748 Cco-Chr5:35319227 1.40E-102 transposed
Cco10g1541 Cco-Chr10:28631163 Cco05g2748 Cco-Chr5:35319227 1.30E-91 transposed
Cco11g0468 Cco-Chr11:4992406 Cco05g2748 Cco-Chr5:35319227 3.60E-96 transposed
Cco05g2748 Cco-Chr5:35319227 Cco09g2055 Cco-Chr9:34957244 6.30E-146 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g817 . . . . . . Bma14g01758 . . . . . . . Sed06g1586 . Cpe01g01427 Bhi07g01643 Tan04g1149 Cmetu10g1826 Lac13g0255 Hepe10g1694 . . Cla05g02494 Cam05g2679 Cec05g2713 Cco05g2748 Clacu05g2681 Cmu05g2536 Cre05g2651 Cone13ag0994 . . . . Csa05g02391 Chy10g00953 . . Blo11g00893 . . . . . . . Cmo04g02874 . Cma04g01613 . Car04g01654 . Cpe13g00933 . . . . . . . . . . . . . . . . . Chy09g00284 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007653 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 3 1 1 36