Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2749 ATGAGTGGATGGGATAGGGTTAGACCATCGAGTTCGAGATTTGGGCGGGGTAATTCTGCAATGCACGAGAGGACCACCTCTACTACAACGGTTCGACTCGGACGAGTCCAGCCGCAGGCCCCTGGACATCGTACCATCTTCTGCAATGATCGCGACGCTAATCTTCTTGTCAAATTCAAGGGGAATTCAGTTTCGACGACTAAGTACAACTTCTTCACTTTCTTTCCGAAAGGGTTGTTTGAACAGTTCAGGCGTGTGGCTAACCTATACTTTCTTACCATCTCAATCTTATCCACCACACCCATCAGTCCTGTGCATCCAATTACAAATGTGGTCCCTTTAAGTCTGGTTCTACTCGTCTCTCTCATTAAAGAAGCATTTGAGGACTGGAAACGATTCCAGAATGATATGGCAATTAATAATAATCTTGTAGATGTGCTGCAAGATCAAAAGTGGGAGAGCGTTCCTTGGAAAAGGTTGCAAGTTGGAGACATTGTTAGGGTTCGGCAAGATGGATTTTTTCCTGCGGATCTTCTTTTCCTTGCTAGTACAAATCCAGATGGTGTCTGCTACATTGAGACTGCTAACCTGGACGGGGAGACAAATTTGAAGATTAGGAAGGCCCTGGAAAAGACCTGGGATTACCTGACTCCAGAGAAGGCATCTGAATTTAAAGGTGAAGTACAATGCGAGCAACCAAACAATTCACTCTACACTTTCACAGGCAATGTTATTATTCAGAAGCAAACATTACCTCTCAGCCCAAACCAACTTTTATTGCGAGGATGCAGTCTCAGGAACACTGAGTATATTGTTGGGGCTGTTATTTTTACTGGCCATGAAACAAAGGTTATGATGAATGCTATGAATGTTCCCTCCAAAAGAAGTACTCTGGAAAAGAAACTTGACAAACTTATACTTACACTATTTGCTACTCTCTTTATGATGTGTTTGATTGGAGCCATCGGCAGTGGTGTGTTTGTAAACCAAAAGTACTACTACTTAGCTCTTGATAAGGGAGGTGAAAACCAATTCAACCCTCGCAACCGGTTCCTGGTTGTCATTCTGACCATGTTTACCCTGATTACTCTGTACTCGACAATCATTCCTATTTCCCTTTATGTTTCCATTGAGATGATCAAATTTATTCAATCGACACAATATATCAATAAAGATCTAAATATGTTCCATGCTGATAGCAATACCCCTGCATTGGCCAGAACTTCCAATTTGAACGAAGAACTTGGACAGGTAGAGTACATCTTTTCAGATAAAACTGGTACTCTTACCAGGAATCTAATGGAGTTCTTTAAGTGTTCAATTGGTGGAGAGGTTTATGGCACTGGTATCACAGAAATAGAGAGGGGAATTGCTGAGCAGAATGGCTTGAAAGTGGAAGAGGCATCAGCCAATGCTGTTCAAGAAAAGGGATTTAACTTCGTTGATGCAAGGCTAATGAGAGGAGCATGGAGAAATGAGCCCAACGCTGATCTTTGTAAGGAATTTTTCAGATGCCTTGCTATTTGTCATACTGTACTTCCTGAGGGTGACGAATCCCCAGAAAAGATCACATATCAAGCAGCATCACCTGATGAGGCTGCCTTGGTAACTGCTGCTAAAAACTTTGGCTTCTTCTTTTACAGGCGTACACCTACAACAATATATGTTCGCGAATCTCATGTTGAGAAGATGGGTAAAATCCAAGATGTTTCTTATGAAATTCTCAATGTACTTGAGTTCAATAGTGTAAGGAAGCGTCAGTCTGTGGTGTGTCGTTATTCTGATGGCAGGCTTGTTCTGTACTGCAAGGGTGCTGATACCGTAGTATATGAGAGATTGGCTGGTGGAAATGATGATCTGAAGAATGTAACTAGGGAACACTTGGAGAAATTTGGATCTTCCGGTCTGAGAACCCTATGCCTTGCTTACAGAGATTTGCATCCTGACGTGTATGAAAGCTGGAATGAGAAATTCATTCAAGCTAAGTCTTCATTAAGAGATCGTGAAAAGAAATTGGATGAGGTTGCAGAACTTATAGAGAAAGAACTTATTTTGATTGGCTGTACTGCTATAGAAGATAAGCTTCAAGAAGGAGTACCAAACTGTATACAGACACTTTCTAGAGCTGGTATCAAGATTTGGGTGCTAACAGGAGACAAGATGGAAACTGCTATTAATATAGCTTATGCTTGCAATTTAATAAACAATGAAATGAAACAATTTATTATCAGTTCAGAAACGGATGCAATCAGAGAAGTTGAAAACAGGGGTGACCAAGTAGAACTTGCACGTTTTATTAGAGAAGAAGTAAAAAAGGAACTGAAGAGATGTCTTGAGGAAGCGCAGCAGTGTTTACATTCTGTCTCTCCACCAAAATTAGCACTCGTTATAGATGGAAAATGTTTGATGTATGCATTAGATCCAAGTCTGCGAGTTACTTTACTAAACTTGAGCTTGAATTGTAGTTCGGTTGTTTGCTGCCGGGTTTCTCCTTTGCAGAAAGCGCAGGTGACAAGTCTGGTGAAGAAAGGTGCACAGAAAATAACACTTAGTATTGGCGATGGTGCTAATGATGTTAGCATGATTCAAGCAGCTCATGTGGGCATTGGAATAAGTGGGCAGGAAGGAATGCAAGCAGTGATGGCTAGTGATTTTGCTATTGCTCAGTTTCGCTTTCTCACAGATTTGCTTCTTGTGCATGGGCGATGGTCATATCTTAGAATATGCAAGGTTGTCACGTACTTCTTTTACAAGAATCTTACATTCACTTTAACTCAGTTTTGGTTTACCTTCCAAACTGGATTTTCTGGTCAAAGATTCTACGATGATTGGTTCCAGTCGTTGTATAATGTCATATTCACCGCCCTACCTGTAATAATAGTTGGACTATTTGACAAGGATGTCAGTGCTTCCCTTTCCAAAAAGTACCCTGAGCTCTACAGAGAGGGAATAAAAAATGTGTTCTTCAAGTGGAGAGTTGTGACAACTTGGGCTTTCTTTTCCATCTACCAATCTTTAGTCTTTTATTATTTTGTAACCGCTTCTAGTTCCAGCAGTCAATCGTCATCTGGCAAGGTGTTTGGTCTGTGGGATATCAGCACGATGACTTTCACTTGCATTGTCGTGACTGTGAATTTGCGGCTGCTTATGATCTGCAATTCAATTACCCGGTGGCATTATATTACAGTTGGGGGAAGCATTTTAGCATGGTTCCTATTTATTTTCTTATATTCCGGTATTATGACACCCCATGATAGGCAGGAAAATGTATATTTCGTCATATATGTCTTAATGAGTACATTATACTTTTACGTAGCTGTTATCCTTGTCCCCGTTGTTGCACTTCTTTGTGATTTCGCTTACCAAGGCATTCAGAGATGGTTTTTCCCCTACGATTATCAGATAGTACAAGAAATACATAGACATGAACCTGAAGGTAGAGGTACGGCAGGATTGCTGGAGATTCAGAACCATCTTACACCGGAAGAGGCAAGAAGCTACGCCATGGCTCAACTCCCTCGAGAATTATCAAAGCACACTGGCTTTGCTTTTGACTCACCTGGCTACGAGTCATTTTTTGCTGCACAGCTTGGTATTTATGCCCCACAGAAAGCATGGGATGTTGCTAGGAGAGCCAGTGTGAAGTCAAGACCAAAGATTAAGGAAAAGAAGTATTTTCCCAACACAACATCCATCAAGAGAAAGCTCAACAGAAGTCAAATCTCCTATGCTCTACTGAATGCAAGCTGTTTTAGATTCTCTTGGAGGCTAATTGATTCAGCAAGATGCTTTCCAGCCAGTAGCGTCAAGTTTCACTGTGTAATTATGGATTTGAGAAAGAAGTTGGGAAGACAGCAAAGCAGTGAACATAATCATATCAAATTAGTGGGAACATATTACAAAGTTGTCCTGTACGAATCCATGAGAATGAGATCTGTAACAGTCTTGCTTGGAGCTGTGGTTGTGGGGCTGTTTGTATGGCTTTTAATCGTTGGGTCGCCACCGCGGGGAAGAACAACAAGCTGGCCGGAAGCCAAGTCTGAGGTTGAGGGAAGCCGTGTCATGAAGCAAGCTAAGGAATTGACCAACATCAACCATCCAAAGTTGGATCCTAACTTTATGAGCAAAGTTAGAGTTCCTAAAGGACCGGACCCCATTCATAACAGGAGAATTGGGGTTAAAGGAGGGCCTCCCAGAGGAGCTTAG 4206 41.61 MSGWDRVRPSSSRFGRGNSAMHERTTSTTTVRLGRVQPQAPGHRTIFCNDRDANLLVKFKGNSVSTTKYNFFTFFPKGLFEQFRRVANLYFLTISILSTTPISPVHPITNVVPLSLVLLVSLIKEAFEDWKRFQNDMAINNNLVDVLQDQKWESVPWKRLQVGDIVRVRQDGFFPADLLFLASTNPDGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEVQCEQPNNSLYTFTGNVIIQKQTLPLSPNQLLLRGCSLRNTEYIVGAVIFTGHETKVMMNAMNVPSKRSTLEKKLDKLILTLFATLFMMCLIGAIGSGVFVNQKYYYLALDKGGENQFNPRNRFLVVILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQYINKDLNMFHADSNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEVYGTGITEIERGIAEQNGLKVEEASANAVQEKGFNFVDARLMRGAWRNEPNADLCKEFFRCLAICHTVLPEGDESPEKITYQAASPDEAALVTAAKNFGFFFYRRTPTTIYVRESHVEKMGKIQDVSYEILNVLEFNSVRKRQSVVCRYSDGRLVLYCKGADTVVYERLAGGNDDLKNVTREHLEKFGSSGLRTLCLAYRDLHPDVYESWNEKFIQAKSSLRDREKKLDEVAELIEKELILIGCTAIEDKLQEGVPNCIQTLSRAGIKIWVLTGDKMETAINIAYACNLINNEMKQFIISSETDAIREVENRGDQVELARFIREEVKKELKRCLEEAQQCLHSVSPPKLALVIDGKCLMYALDPSLRVTLLNLSLNCSSVVCCRVSPLQKAQVTSLVKKGAQKITLSIGDGANDVSMIQAAHVGIGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSASLSKKYPELYREGIKNVFFKWRVVTTWAFFSIYQSLVFYYFVTASSSSSQSSSGKVFGLWDISTMTFTCIVVTVNLRLLMICNSITRWHYITVGGSILAWFLFIFLYSGIMTPHDRQENVYFVIYVLMSTLYFYVAVILVPVVALLCDFAYQGIQRWFFPYDYQIVQEIHRHEPEGRGTAGLLEIQNHLTPEEARSYAMAQLPRELSKHTGFAFDSPGYESFFAAQLGIYAPQKAWDVARRASVKSRPKIKEKKYFPNTTSIKRKLNRSQISYALLNASCFRFSWRLIDSARCFPASSVKFHCVIMDLRKKLGRQQSSEHNHIKLVGTYYKVVLYESMRMRSVTVLLGAVVVGLFVWLLIVGSPPRGRTTSWPEAKSEVEGSRVMKQAKELTNINHPKLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA 1401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35341328 35363021 + CcPI632755_05g027490.1 Cco05g2749 180377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2749 1401 Gene3D - 124 289 - -
Cco05g2749 1401 FunFam Phospholipid-transporting ATPase 685 892 - -
Cco05g2749 1401 NCBIfam HAD-IC family P-type ATPase 825 931 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco05g2749 1401 SUPERFAMILY Calcium ATPase, transduction domain A 141 285 IPR008250 -
Cco05g2749 1401 Gene3D - 532 684 IPR023299 GO:0000166(InterPro)
Cco05g2749 1401 MobiDBLite consensus disorder prediction 12 29 - -
Cco05g2749 1401 MobiDBLite consensus disorder prediction 1 29 - -
Cco05g2749 1401 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 30 1143 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0048194(PANTHER)|GO:0140326(PANTHER)
Cco05g2749 1401 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 485 690 IPR023299 GO:0000166(InterPro)
Cco05g2749 1401 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Cco05g2749 1401 PRINTS P-type cation-transporting ATPase superfamily signature 852 871 - -
Cco05g2749 1401 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Cco05g2749 1401 Pfam Phospholipid-translocating P-type ATPase C-terminal 880 1130 IPR032630 -
Cco05g2749 1401 SFLD Haloacid Dehalogenase 404 903 - -
Cco05g2749 1401 MobiDBLite consensus disorder prediction 1365 1401 - -
Cco05g2749 1401 Pfam E1-E2 ATPase 143 322 - -
Cco05g2749 1401 SFLD p-type atpase 404 903 IPR044492 -
Cco05g2749 1401 NCBIfam phospholipid-translocating P-type ATPase 59 1138 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Cco05g2749 1401 Pfam Cation transport ATPase (P-type) 516 612 - -
Cco05g2749 1401 CDD P-type_ATPase_APLT_Dnf-like 61 1012 - -
Cco05g2749 1401 SUPERFAMILY HAD-like 410 895 IPR036412 -
Cco05g2749 1401 Gene3D - 685 892 IPR023214 -
Cco05g2749 1401 FunFam Phospholipid-transporting ATPase 120 289 - -
Cco05g2749 1401 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 1130 IPR023298 -
Cco05g2749 1401 Pfam Phospholipid-translocating ATPase N-terminal 46 110 IPR032631 -
Cco05g2749 1401 FunFam Phospholipid-transporting ATPase 529 684 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2589 Cco-Chr5:34145858 Cco05g2749 Cco-Chr5:35341328 2.30E-277 dispersed
Cco05g2749 Cco-Chr5:35341328 Cco06g0899 Cco-Chr6:11443306 5.10E-272 dispersed
Cco04g0813 Cco-Chr4:23446266 Cco05g2749 Cco-Chr5:35341328 1.80E-194 transposed
Cco08g0989 Cco-Chr8:21745021 Cco05g2749 Cco-Chr5:35341328 1.40E-185 transposed
Cco05g2749 Cco-Chr5:35341328 Cco08g1060 Cco-Chr8:22397884 1.00E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2749 K14802 - csv:101207069 2357.79