Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2752 ATGATTTGCGATTGCCAAAGCAGTGTCGGTATAAGAGGCAGCGGAGTTACCGACACGTCGGTTGCGGATTGCTGCAGCAATTTAACCTTAAGGACAAAAATAACAGAGTGCGGCGGAGTTGACGCCTTTAGTTTTGAGTCGGAAATGAACGGGTCTCGCACGTGCTCGCTGTGTGGGAACAACGGCCACAACTCCCGCACGTGCCCGGAAGGGGACGTCGGCGGGTTCATGTTGTTCGGAGTTAGGGTGACGACGGAGGGAAGTAACTCGTTTAGGAAGAGCGTTAGTATGAATAATCTGTCACAATACGAGCAGCCTCAAAGTCAAGACTCCAACAACGCCGATGCCGGATATGCTTCGGACGACGTCGTTCACCCATCTGACCGTGGCGGCGGCCGGAAGAGAGGGATTCCGTGGACAGAGGAAGAGCATAGGCTGTTTTTGTTGGGATTACAGAAGGTTGGGAAGGGAGATTGGAGAGGGATTTCGAGGAATTTTGTGAAGACGCGTACGTCAACTCAGGTTGCGAGTCATGCTCAGAAATACTTTCTCCGACGGAATAATTTCAGTCGGAGACGCCGTAGGTCCAGCCTTTTCGATATCACTACTCACACATTCACGAGCTCATCCACGGAAGACGATTTGATATTTTCCGGCCACGAGGCTATGCCGCCACCGCTACCACCGTCACAGCCGCAAAAAGACACCCTTCCGGGAAATTTCCCCGTGAAAATCTATCCAGCGAAACCACCTCCTGCCGCCGTGGCCGGTGGCGCCGTTGATAGCAACGCCGTAGAGGGTACACTAACGCTAAGTTCATCAAATTATCAGGCAAAGACTTGCAGTTCCAGAATTAGTCGTCCAATACCAATGCTTCCTCTATCTCCATACCCAAAGTTGGCTGAATTGAACATTAACGAGAGAACGCCAGAAGACCCTTTACCTCTAACTTTGAAGCTCTCAACTCCACACTCGGAGGAACAGTCACCGGCGGCGGCTTCAAAGTCGTCCGGCAGTTTCCAGACAATTTCCGGCGGCGGAGACAGCATAGACATTGTCAGTGTTGCTTGA 1071 51.82 MICDCQSSVGIRGSGVTDTSVADCCSNLTLRTKITECGGVDAFSFESEMNGSRTCSLCGNNGHNSRTCPEGDVGGFMLFGVRVTTEGSNSFRKSVSMNNLSQYEQPQSQDSNNADAGYASDDVVHPSDRGGGRKRGIPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTSTQVASHAQKYFLRRNNFSRRRRRSSLFDITTHTFTSSSTEDDLIFSGHEAMPPPLPPSQPQKDTLPGNFPVKIYPAKPPPAAVAGGAVDSNAVEGTLTLSSSNYQAKTCSSRISRPIPMLPLSPYPKLAELNINERTPEDPLPLTLKLSTPHSEEQSPAAASKSSGSFQTISGGGDSIDIVSVA 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35373573 35379238 - CcPI632755_05g027520.1 Cco05g2752 180380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2752 356 Gene3D - 137 189 - -
Cco05g2752 356 SUPERFAMILY Homeodomain-like 133 188 IPR009057 -
Cco05g2752 356 ProSiteProfiles Zinc finger CCHC-type profile. 55 70 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco05g2752 356 MobiDBLite consensus disorder prediction 101 116 - -
Cco05g2752 356 FunFam transcription factor MYB1R1 137 188 - -
Cco05g2752 356 Pfam Myb-like DNA-binding domain 138 183 IPR001005 -
Cco05g2752 356 MobiDBLite consensus disorder prediction 321 348 - -
Cco05g2752 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 187 IPR017930 -
Cco05g2752 356 CDD SANT 138 183 IPR001005 -
Cco05g2752 356 MobiDBLite consensus disorder prediction 309 356 - -
Cco05g2752 356 SMART sant 135 185 IPR001005 -
Cco05g2752 356 MobiDBLite consensus disorder prediction 101 136 - -
Cco05g2752 356 ProSiteProfiles Myb-like domain profile. 138 183 IPR001005 -
Cco05g2752 356 NCBIfam myb-like DNA-binding domain, SHAQKYF class 134 185 IPR006447 GO:0003677(InterPro)
Cco05g2752 356 ProSiteProfiles SANT domain profile. 139 187 IPR017884 -
Cco05g2752 356 PANTHER TRANSCRIPTION FACTOR KUA1 52 230 IPR052245 GO:0009723(PANTHER)|GO:0009739(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2752 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2752 Cco-Chr5:35373573 Cco10g0251 Cco-Chr10:2693968 4.60E-36 dispersed
Cco09g0017 Cco-Chr9:133103 Cco05g2752 Cco-Chr5:35373573 7.00E-37 transposed
Cco01g1426 Cco-Chr1:26021592 Cco05g2752 Cco-Chr5:35373573 2.00E-35 wgd
Cco05g2752 Cco-Chr5:35373573 Cco06g1865 Cco-Chr6:28876501 1.30E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g806 . . . . . . . . Cmo04g01686 . . . . . Sed04g0666 . Cpe01g01422 Bhi07g01651 Tan04g1157 Cmetu10g0115 Lac13g0251 Hepe10g1689 . . Cla05g02500 Cam05g2684 Cec05g2717 Cco05g2752 Clacu05g2687 Cmu05g2541 Cre05g2656 . . . Cone12ag0614 . Csa05g02385 Chy10g00949 Cme10g00477 . . . . . . . . . . . Cma04g01608 . Car04g01650 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013797 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59403 PF00249 Myb_DNA-binding 4.60E-10 CL0123 Cco TF