Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2759 ATGGATTTGCTGCTTCACCTTCAGCTTCAACCATGGCAGCTTCATCTCTTCCTTTTCTTCCTTTCTGTTTCCCCTGTTTGTTATTGCCAACTCAGTCCCCCTCAAAATATCGAAACCTTCTACCCTTCCCCATTTATTCCTCAACCACCGTCGCCAATTTCGCCGTCGTCTTCACTTGACCATCCGCCGTCGTCCACGTCAACCAAGACCATCGCCACGGCGGTGGTTGTCACTGCAGTGGGTGTGGCTCTGCTTTCCACGTTGTTCTTCTTCTTAATACAGAGATATGTGATCGGAAGAAAACGAAAAACAGAGGAGGCAAATTCAGGGACCGGTCCGGGTTTGGTCTCGCAGCCGGCGGTTGCTCAGAATGAATTTTCACGTGTTGATGGGAATCTTAAAGGGTTTATTGTGGATGAAAATGGGTTGGATGTGATTTATTGGAAGAGACTTGAAAGAAAGAAATCCAAGAATAGCTTTGATCGGAGTGACGGAGAAAGAAATGTTAAGGAAAATCGAAGCAAAAAGTCAGAGTCAGTTCAAGAAATTCCTCTGCTTCGAGGAAAATCTTCAACTTCACATGTTAAAATTGCACCGGAAGATGAAGAATCCAGTCGGAATACATCTCCTCCGCCCCCTCCACCGCCCCAGATTAACAACCCTCCGCCATTTACTGGGAATTCTGTTCAGTCAGTTGAAAAACCATCGAGTAGTTCAAATCTTTCATTAACAGCACCACCGCAACCGGCGGCAATTCCAGTACCTCCGTCACAATCTCTCATGGCTGTTCCCAACAATAAGAGCTCTGTTCCGCCACCGCCCCCCCCGATTCCAGCAAAGACCAATTCAAGTCTGCCGCAGCCGCCACCTCCCATTCCGGCCAAGACCAATTCAAGACCGCCGCCACCACCTATTCAATCCAAGACCAATTCAGCAGCTCCACCTCCCCCTCCTATACCGGCCAAGGCAAATCCGGCAGCACCAGCGCCGCCACCGCCCAAGGCCGGCGGTTCAAAATTGCCCTTAAGGCCTGCACCTCAAAAAGAGGGTAATAAATCCTCTAGAGAGGATTCTTCATCAGCCGACAATGGTCAGGTTAAAATGAAGCCCCTGCATTGGGATAAAGTGAACACTGCAAATGCCGATCATTCCATGGTTTGGGACAAAATGAGCGCCGGTTCTTTCAAATTTGATGGGGATCTTATGGAAGCTCTGTTTGGATATGTCGCAACCAACCGGAAATCCCCACGGAGTGAAGCTAGTTCTACAGCGAACGCCGTTGGCCGAAACTCAGGGCCGTCGCAAACTTTCATTCTTGAACCGAAAAAATCTCAGAACATAGCCATTGTGGTCAAGTCCTTGACTATTCCGCGCAACGAAATCCTCGATGCGCTCAACGAAGGTCAAGGACTCGAAACAGAGATTCTTGAAAAACTCACAAGAATTGCTCTGACTCAAGAAGAAATTTCCCAAATTCTTGCTTACAAAGGAGACCCCCAGCAGCTTGCTGATGCTGAATCTTTCCTTTACCATATTCTCAAATCGGTTCCATCTGCCTTTGTTCGTTTCAATGCCATGCTTTTCCGATTGAATTTCACTTCGGAGATTCTCCATCTCAAGGAATCTCTAGAAACTCTGGAGTCCGCCTGCAAGCAGCTTAGAACTCGAGGGCTGTTTTTAAAATTGCTTGAAGCAATTCTCAAAGCTGGGAATCGGCTAAATGCAGGAACTGCAAGAGGAAATGCCAGAGCTTTCAACCTTACAGCTCTTCGGAAGCTCTCTGATGTTCGAAGCACTGATGGGAAAACCACTTTGCTTCACTTTGTAGTGCAAGAAGTGATCAGGGCAGAAGGGAAAAAGTGTGTTTTAAACAAGAACAAGAGCTTGAGCCGTAATAGCAGCCATAGCAGTGACAACAGCTTTAGCAGCTTCGAAAATTCGACTGCGAAGGAGGACAGAGTAAAGGAATATATGATGTTGGGACTGCCAGTTGTGGGAGGTCTAAGCGCTGAATTCTCTAATGTAAAGAAAGCGGCAGCGATCGACTTCGAGAGCTTCGTCAAGGCTGGGTCATCTCTGACTAGCCGAACCGCAGAAATCCGGCAGCTCTTAACTCAAATTGGGAACAACGAAGGTGGTTTTGCTAAAGAAATGAGAGGCTTTCTTGAGGCAGCAGAGAATGAGCTGAAGGTGGTGAGAGAAGAACAAACAAAAGTGATGGAGTTAGTGATGAAGACAACAGAGTATTATCAGGCAGGAAGTTCAAAAGATAAAGAAGCAAACCGGCTTCAATTATTCATCATAGTAAAAGATTTCCTAGAAATGGTAGATCGGGTTTGTGTTGAAATTACTCGAGATCTCCAGAAGAGGAGATCATCGGGAGTAAATGTGGGTTCGGGTTCATCACCGGTGAGATCGAAGGCCATCTTCCATAACTTGCCGGAAAATTTTATGTCAGACAAGTCCAGAGGCAGTTCTAGTGATACAGATGATGAATTCTGA 2502 46.68 MDLLLHLQLQPWQLHLFLFFLSVSPVCYCQLSPPQNIETFYPSPFIPQPPSPISPSSSLDHPPSSTSTKTIATAVVVTAVGVALLSTLFFFLIQRYVIGRKRKTEEANSGTGPGLVSQPAVAQNEFSRVDGNLKGFIVDENGLDVIYWKRLERKKSKNSFDRSDGERNVKENRSKKSESVQEIPLLRGKSSTSHVKIAPEDEESSRNTSPPPPPPPQINNPPPFTGNSVQSVEKPSSSSNLSLTAPPQPAAIPVPPSQSLMAVPNNKSSVPPPPPPIPAKTNSSLPQPPPPIPAKTNSRPPPPPIQSKTNSAAPPPPPIPAKANPAAPAPPPPKAGGSKLPLRPAPQKEGNKSSREDSSSADNGQVKMKPLHWDKVNTANADHSMVWDKMSAGSFKFDGDLMEALFGYVATNRKSPRSEASSTANAVGRNSGPSQTFILEPKKSQNIAIVVKSLTIPRNEILDALNEGQGLETEILEKLTRIALTQEEISQILAYKGDPQQLADAESFLYHILKSVPSAFVRFNAMLFRLNFTSEILHLKESLETLESACKQLRTRGLFLKLLEAILKAGNRLNAGTARGNARAFNLTALRKLSDVRSTDGKTTLLHFVVQEVIRAEGKKCVLNKNKSLSRNSSHSSDNSFSSFENSTAKEDRVKEYMMLGLPVVGGLSAEFSNVKKAAAIDFESFVKAGSSLTSRTAEIRQLLTQIGNNEGGFAKEMRGFLEAAENELKVVREEQTKVMELVMKTTEYYQAGSSKDKEANRLQLFIIVKDFLEMVDRVCVEITRDLQKRRSSGVNVGSGSSPVRSKAIFHNLPENFMSDKSRGSSSDTDDEF 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35433806 35436388 - CcPI632755_05g027590.1 Cco05g2759 180387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2759 833 MobiDBLite consensus disorder prediction 267 339 - -
Cco05g2759 833 MobiDBLite consensus disorder prediction 223 246 - -
Cco05g2759 833 SUPERFAMILY Formin homology 2 domain (FH2 domain) 434 791 - -
Cco05g2759 833 MobiDBLite consensus disorder prediction 156 182 - -
Cco05g2759 833 PANTHER FORMIN-RELATED 32 831 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Cco05g2759 833 MobiDBLite consensus disorder prediction 413 437 - -
Cco05g2759 833 Coils Coil 536 556 - -
Cco05g2759 833 Coils Coil 715 742 - -
Cco05g2759 833 MobiDBLite consensus disorder prediction 414 437 - -
Cco05g2759 833 MobiDBLite consensus disorder prediction 206 222 - -
Cco05g2759 833 ProSiteProfiles Formin homology-2 (FH2) domain profile. 358 802 IPR015425 -
Cco05g2759 833 Pfam Formin Homology 2 Domain 361 776 IPR015425 -
Cco05g2759 833 SMART it6_source 358 791 IPR015425 -
Cco05g2759 833 MobiDBLite consensus disorder prediction 156 372 - -
Cco05g2759 833 Gene3D Formin, FH2 domain 378 794 IPR042201 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2759 Cco-Chr5:35433806 Cco08g1035 Cco-Chr8:22168224 4.90E-113 dispersed
Cco05g2759 Cco-Chr5:35433806 Cco05g1695 Cco-Chr5:24880812 1.50E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2759 K28090 - csv:101208197 1190.25