Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2760 ATGACAGTCCGCCCCACTGACTCGGTTTCCCAAATTCCACCGCAAAACTCCATCTTCTCCCGCCGCCGGAGGTCCGATCCGTTCGACGATTTAGATCGTTTCACCACCTCTGATTCCGAGGTTCATGTTCTCGCCGTTGATGACAACCTCGTCGACCGTGCAGTAATTGAACGTCTCCTCCGCCTCACTGCCTGTCGAGTTACTGCAGTGGATAGTGGAATTAGAGCTTTACAATATCTCGGATTGCAAGAGGAGACTAGTTCCCAAGTTGGTTTTGATAGCTTGAAGGTCGATATGATCATAACCGACTACTGTATGCCCGGAATGACAGGATATGAATTGCTAAAGAAAATTAAGGAATCATCAACTCTGAGAGAGATTCCGGTGGTGATTATGTCATCGGAGAACGTGGTGGCGAGGATAGACAGGTGTTTGGAGGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAATTAGCAGATGTGAAACGGCTCAGGGAATATATGGTGGGGGACGAAAAGACTGGAAGTGAAAGAAGTGGGATCAACAAAAGGAAGCTACGAGAGCCGTGTGATCAACCTTCGTCATCGCCGTCCATTTCATCGCCAGCATCATCGGATTCCTCTCCATCATGTCCATCATCTTCATCACCGTCAGATTCGCTTCAATCAACCCCATCATCGTCAGAGCCGTCTTCTCCGACGTCTACTCCTCAATCCGACGGCTCTAAATGA 735 48.98 MTVRPTDSVSQIPPQNSIFSRRRRSDPFDDLDRFTTSDSEVHVLAVDDNLVDRAVIERLLRLTACRVTAVDSGIRALQYLGLQEETSSQVGFDSLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLADVKRLREYMVGDEKTGSERSGINKRKLREPCDQPSSSPSISSPASSDSSPSCPSSSSPSDSLQSTPSSSEPSSPTSTPQSDGSK 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35446651 35448444 - CcPI632755_05g027600.1 Cco05g2760 180388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2760 244 CDD REC_typeA_ARR 43 165 - -
Cco05g2760 244 MobiDBLite consensus disorder prediction 192 244 - -
Cco05g2760 244 Gene3D - 41 199 - -
Cco05g2760 244 Pfam Response regulator receiver domain 43 162 IPR001789 GO:0000160(InterPro)
Cco05g2760 244 MobiDBLite consensus disorder prediction 173 191 - -
Cco05g2760 244 SMART REC_2 41 166 IPR001789 GO:0000160(InterPro)
Cco05g2760 244 MobiDBLite consensus disorder prediction 173 244 - -
Cco05g2760 244 PANTHER TWO-COMPONENT RESPONSE REGULATOR 38 230 IPR045279 GO:0009736(InterPro)
Cco05g2760 244 SUPERFAMILY CheY-like 41 166 IPR011006 -
Cco05g2760 244 ProSiteProfiles Response regulatory domain profile. 42 170 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2760 Cco-Chr5:35446651 Cco05g2946 Cco-Chr5:36923275 3.40E-38 dispersed
Cco01g0785 Cco-Chr1:8246308 Cco05g2760 Cco-Chr5:35446651 4.40E-39 transposed
Cco10g1598 Cco-Chr10:29261022 Cco05g2760 Cco-Chr5:35446651 4.30E-40 transposed
Cco05g2760 Cco-Chr5:35446651 Cco06g1869 Cco-Chr6:28929583 2.70E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59405 PF00072 Response_reg 1.20E-21 CL0304 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2760 K14492 - csv:101209506 324.709