Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2763 ATGGAGTTTCTTTACATAATCATCACCTCCATTTTTCTGCCTTTAACCTTCTCTCTCAACCTTGAACCTACTCTCCATGGAACCAACCCGAGTAATTCCCTTCAAACCAATCATAATTCTTCACTCAGACACCAAATTCTGGACCTCGCCAATCATCCCACCACTGTAAATTGGATGAAGACCATTAGGAGAAAAATCCACGAGAACCCAGAACTTGCTTTTGAAGAATTTGAAACCAGTAAGCTTATTAGACAGGAGCTTGACAATCTCCGCGTTTCTTATCGATGGCCGGTCGCCGGTACCGGCGTAGTGGCTTTCATCGGCTCTGGTTCTCCTCCCTTTGTTGCTCTAAGAGCAGATATGGATGCTTTGCCTATTGAGGAATTGGTGGAATGGGAGCATAAGAGCAAAGTTGAGGGGAAAATGCATGCTTGTAGTCATGATGCTCATGTTGCCATACTCCTTGGCGCTACTAAGATTCTGAATCAACTGCGACAGAAACTACAGGGCACTGTTGTTCTTATATTTCAGCCAGCGGAAGAAAGAGGAGGAGGAGCAAAAGACATGATAAATGAAGGTGTCCTTGATGGCGTAGAAGCTATATTTGGGCTGCACCTTGTGCATAAATATCCAGTGGGTGTTGTTGCTTCACGTCCCGGCGAGTTTCTTGCAGGGTGTGGAAGCTTCAAAGCAAAGATAAAGGGGAAAGGGGGTCATGCGGCAATTCCACAGCATTCAATTGATCCTATTTTGGCAGCTTCAGCAGCAATTATAAGTTTGCAAAGCATAGTCTCAAGAGAGACGGACCCTTTAGATTCTCAGGTGGTTTCTGTGGCCATGGTTCAAGCAGGAACTGCACTCAATGTCATCCCAGACTCGGTGACTATTGCTGGTACCTTCAGAGCTTTCAGCAAGAAGAGCTTCAATGCCCTCAGAGATAGGATAGAAGAGGTCATAAACGGGCAGGCAGCTGTGCATCGGTGCACGGCGAAGACTGATTTCCTAGGCAAGGAACACCCAACAATTCCTCCGACTATAAATGATGAGAAAATTTATGAACATGTTCGACGTGTCTCTAAGGAAATTGTAGGAAAAGAAAAAGTAAAAGTATCTCCAAGCTTCATGGGAAGTGAAGATTTTGCATTCTTTTCAGACAAAGTGCCGGGATCTTTCTTATTTCTAGGCACATATAATGAGAGGATTGGAGCTATACATCCTCCACACAGCCCTTACTATAAAATTGATGAAAATGTGCTTCCTATCGGCGCAGCAATTCATGCAGCATTTGCTTATTCTTATCTCTTGAATTCATCATCAACATCCCATTCTTTCTCTGACCACTGA 1344 44.12 MEFLYIIITSIFLPLTFSLNLEPTLHGTNPSNSLQTNHNSSLRHQILDLANHPTTVNWMKTIRRKIHENPELAFEEFETSKLIRQELDNLRVSYRWPVAGTGVVAFIGSGSPPFVALRADMDALPIEELVEWEHKSKVEGKMHACSHDAHVAILLGATKILNQLRQKLQGTVVLIFQPAEERGGGAKDMINEGVLDGVEAIFGLHLVHKYPVGVVASRPGEFLAGCGSFKAKIKGKGGHAAIPQHSIDPILAASAAIISLQSIVSRETDPLDSQVVSVAMVQAGTALNVIPDSVTIAGTFRAFSKKSFNALRDRIEEVINGQAAVHRCTAKTDFLGKEHPTIPPTINDEKIYEHVRRVSKEIVGKEKVKVSPSFMGSEDFAFFSDKVPGSFLFLGTYNERIGAIHPPHSPYYKIDENVLPIGAAIHAAFAYSYLLNSSSTSHSFSDH 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35488101 35490614 + CcPI632755_05g027630.1 Cco05g2763 180391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2763 447 SUPERFAMILY Bacterial exopeptidase dimerisation domain 225 334 IPR036264 -
Cco05g2763 447 Gene3D Zn peptidases 61 419 - -
Cco05g2763 447 PIRSF Amidohydrol_AmhX 46 438 IPR017439 GO:0016787(InterPro)
Cco05g2763 447 NCBIfam amidohydrolase 60 422 IPR017439 GO:0016787(InterPro)
Cco05g2763 447 Gene3D - 224 342 - -
Cco05g2763 447 CDD M20_IAA_Hyd 59 434 IPR044757 GO:0009850(InterPro)|GO:0016787(InterPro)
Cco05g2763 447 Pfam Peptidase dimerisation domain 225 323 IPR011650 -
Cco05g2763 447 SUPERFAMILY Zn-dependent exopeptidases 55 436 - -
Cco05g2763 447 FunFam N-acetyldiaminopimelate deacetylase 224 342 - -
Cco05g2763 447 PANTHER PEPTIDASE M20 FAMILY MEMBER 36 438 IPR017439 GO:0005783(PANTHER)|GO:0009850(PANTHER)|GO:0010179(PANTHER)|GO:0016787(PANTHER)|GO:0016787(InterPro)
Cco05g2763 447 Pfam Peptidase family M20/M25/M40 116 430 IPR002933 GO:0016787(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2763 K14664 - - csv:101208682 765.763
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1651 Cco-Chr3:31155160 Cco05g2763 Cco-Chr5:35488101 6.10E-139 dispersed
Cco04g1241 Cco-Chr4:27780145 Cco05g2763 Cco-Chr5:35488101 6.10E-115 dispersed
Cco05g2763 Cco-Chr5:35488101 Cco08g0713 Cco-Chr8:18666628 4.10E-135 dispersed
Cco05g2763 Cco-Chr5:35488101 Cco07g1431 Cco-Chr7:28397000 6.60E-141 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g786 . . . . . . . . . . . . . . Sed06g1602 . . Bhi07g01672 Tan04g1177 Cmetu10g1745 Lac13g0238 Hepe10g1675 . . Cla05g02511 Cam05g2695 Cec05g2729 Cco05g2763 Clacu05g2698 Cmu05g2552 Cre05g2667 . . . . Lsi04g00510 Csa05g02371 Chy10g00935 Cme10g00490 . . Bda07g01569 . Bpe11g01737 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011718 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 30