Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2768 ATGTCCGTATCGATTTCCAACTGCTTCTCTAATTTACTCTGTCAAGAAGATTCTTCCGGCGTCTTCTCCGGCGAGACGCCGGGGTGTTCTTCCGACCTTGATTCTCCGGCTTGCGTCGAGGAATCTATTTCCGTCTTCATCAAGAATGAGCGTCACTTCGTCCCCGATTACGACTGTTTGTCGCGCTACCAATCTCCGTCGCTTGATGCGGCCGCTAGATTAGACTCTATTGCATGGATTCTTAAGGTTCAAGCGTATTACGGTTTTCAGCCGTTAACAGCGTATCTCTCCGTCAACTACTTGGATCGCTTCCTTAGTTCACGCCGTTTGCCGCAAACAAATGGGTGGCCATTGCAACTCCTCTCTGTTGCTTGTCTCTCACTCGCTGCTAAAATGGAGGAACCTCTTGTTCCCGCATTACTGGATCTTCAGGTTGAAGGGGCTAAATATATATTTGAACCCAGAACGATATGCAGGATGGAATTATTGGTGCTGAGGGTATTGGATTGGCGGCTGCGTTCAGTAACACCATTCAATTTCATAGCATTCTTTGCTTGCAAACTCGACCCATCTGGAGATTTCATTGGATTTCTTATCTCAAGAGCAACAGAAATTATACTGTCGCATATCCGAGAGGTAATATTTCTGGAGTACTGGCCATCGTGTATTGCGGCGGCCGCGTTGCTTTGTGCAGCAAATGAAGTCCCGAATTTGTCTGTTGTCAATCCAGAACATGCTGAATCCTGGTGCAGTGGTCTAAGGAAAGAAAATATCATCGGCTGCTACCGGTTAATGGAAGAGATTGTGCTTGATAATAGCCGGAGAAACTCCCCCAAAATCATACCTCAGTTTAGAGTGACAGTTCGCACTAGAATGAGATCCAGCGACTTATCTTCCACCTACTCTTCCTCTTCCTCATCTTCGTCATCACCAAACAAAAGGAGAAAATTAAACCAGACCCATCTCTGGGTAGATGATGAGAAAGATTCCCAATGGGAGGGGAAACTAAAGGGAAAGAGGGGTTTGTTTGATTTTGAGGGAAATGGCAGAGCGTTGAATAAGTGGAGTCCATATGGATATCATAGTGTTAAATGTATTATTATGAGAATGGGCTCTCCCTCAAACCAGCTGGCTGGCCCCTCCGATCAGCTAAACTCCGGTGACCTCCTGCCGTGGCTGCTTTCATCTTAG 1191 46.35 MSVSISNCFSNLLCQEDSSGVFSGETPGCSSDLDSPACVEESISVFIKNERHFVPDYDCLSRYQSPSLDAAARLDSIAWILKVQAYYGFQPLTAYLSVNYLDRFLSSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFACKLDPSGDFIGFLISRATEIILSHIREVIFLEYWPSCIAAAALLCAANEVPNLSVVNPEHAESWCSGLRKENIIGCYRLMEEIVLDNSRRNSPKIIPQFRVTVRTRMRSSDLSSTYSSSSSSSSSPNKRRKLNQTHLWVDDEKDSQWEGKLKGKRGLFDFEGNGRALNKWSPYGYHSVKCIIMRMGSPSNQLAGPSDQLNSGDLLPWLLSS 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35521311 35524964 + CcPI632755_05g027680.1 Cco05g2768 180396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2768 396 CDD CYCLIN_AtCycD-like_rpt1 72 170 - -
Cco05g2768 396 MobiDBLite consensus disorder prediction 295 320 - -
Cco05g2768 396 FunFam D2/4-type cyclin 56 173 - -
Cco05g2768 396 SUPERFAMILY Cyclin-like 157 275 IPR036915 -
Cco05g2768 396 Gene3D - 46 236 - -
Cco05g2768 396 SUPERFAMILY Cyclin-like 34 172 IPR036915 -
Cco05g2768 396 ProSitePatterns Cyclins signature. 73 104 IPR048258 -
Cco05g2768 396 PANTHER CYCLINS 37 268 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cco05g2768 396 SMART Cyclin_C_2 175 311 IPR004367 -
Cco05g2768 396 Gene3D - 56 173 - -
Cco05g2768 396 Pfam Cyclin, N-terminal domain 43 173 IPR006671 -
Cco05g2768 396 Pfam Cyclin, C-terminal domain 175 285 IPR004367 -
Cco05g2768 396 MobiDBLite consensus disorder prediction 295 317 - -
Cco05g2768 396 SMART cyclin_7 78 166 IPR013763 -
Cco05g2768 396 CDD CYCLIN_AtCycD-like_rpt2 175 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0994 Cco-Chr4:25537975 Cco05g2768 Cco-Chr5:35521311 2.80E-23 dispersed
Cco05g2318 Cco-Chr5:31775994 Cco05g2768 Cco-Chr5:35521311 1.90E-37 dispersed
Cco05g2768 Cco-Chr5:35521311 Cco09g2265 Cco-Chr9:36928527 3.40E-125 dispersed
Cco05g2768 Cco-Chr5:35521311 Cco08g1306 Cco-Chr8:24875559 3.50E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2768 K18810 - csv:101209417 590.112