Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2784 ATGTATTTTGTTCATCCTCAAACCAGAGATTCTCTGGTTAGTCCCTCTATTTCCCCTTTGCATTCTTCTTCTTCTTCTTCATTAGCATTTAACAGTGACTACCAAAAACAAGAACCAACTCCACTCACTTCCTCTAGCAGTAAAGTAAGCCCTGCAGTTCTTTTAGTAGTAGTTATTCTGGCACTTTTCCTTTTCATCTCTGGTCTTCTTCACTTGCTAGTGAAATTACTTGTAAAGCAACGTTCCTCATCATCATCAATGTCTGAATCCAATAGCAATAGATTCCCAGAAATGTCTGAATCATCTGCTTTTCAAAGACAGTTACAACAGCTCTTCCATCTTCATGATTCAGGTCTAGATCAAGCCTTCATAGATGCACTCCCTGTTTTCCTTTACAAAGAGATAGTGGGTTTAAAAGAACCTTTTGATTGTGCTGTATGTCTTTGTGAATTTTCAGAACTAGACAAGCTAAGATTGCTCCCTACTTGCAGTCATGCTTTTCACATTGATTGTATAGACACATGGTTGCTTTCTAATTCAACTTGCCCTCTTTGTAGAGGGACCCTTCACATTCACTCACCTGGACTTGCCATAGAAAACCCTGTATATGGTTTTGAAGATTCAGAAGAGACAGAAGAATCTACAGAGGATGGAAGATTTGGTATTCCTACAGCTCAAAAAGTTCCAGAGAGTGACATTATTGGTGAAAAAAGAGTGTTTTCAATCAGGCTTGGGAAATTTAGGAACTTGAATAATGGAGGATTGAGAGGATTAGAGAAAGGAGAGGGAGAAACCAGCAGTAGCAGTTTGAGTGCAAGAAGATGCTATTCAATGGGGTCTTATCAGTATATTGTGGCTGATTCAGAGTTGCAAGTTGCGTTACGTACGAGTAATCGCATCTGTGGGGGAAGTATGAGATTTGTGAAAGTAATAAGAGATTCACAAACTGGGAATTGTCCAATTGATGGTGATGATGATGCTGAGGGGAAGAAGATTAACATTGGAAGTAAAAACGAAAGCTTTTCTGTTTCAAAAATCTGGTTGTGGTCCAAGAAGACTCGACAGCCAAGTGGTTCAGACACCCATGTGCGAGCTAGTTAA 1101 39.51 MYFVHPQTRDSLVSPSISPLHSSSSSSLAFNSDYQKQEPTPLTSSSSKVSPAVLLVVVILALFLFISGLLHLLVKLLVKQRSSSSSMSESNSNRFPEMSESSAFQRQLQQLFHLHDSGLDQAFIDALPVFLYKEIVGLKEPFDCAVCLCEFSELDKLRLLPTCSHAFHIDCIDTWLLSNSTCPLCRGTLHIHSPGLAIENPVYGFEDSEETEESTEDGRFGIPTAQKVPESDIIGEKRVFSIRLGKFRNLNNGGLRGLEKGEGETSSSSLSARRCYSMGSYQYIVADSELQVALRTSNRICGGSMRFVKVIRDSQTGNCPIDGDDDAEGKKINIGSKNESFSVSKIWLWSKKTRQPSGSDTHVRAS 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35618996 35620096 + CcPI632755_05g027840.1 Cco05g2784 180412

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2784 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 44 352 - GO:0031625(PANTHER)
Cco05g2784 366 MobiDBLite consensus disorder prediction 9 29 - -
Cco05g2784 366 SUPERFAMILY RING/U-box 123 192 - -
Cco05g2784 366 CDD RING-H2_EL5-like 143 186 - -
Cco05g2784 366 MobiDBLite consensus disorder prediction 1 29 - -
Cco05g2784 366 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Cco05g2784 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 191 IPR013083 -
Cco05g2784 366 FunFam RING-H2 finger protein ATL46 106 191 - -
Cco05g2784 366 Pfam Ring finger domain 143 186 IPR001841 -
Cco05g2784 366 SMART ring_2 144 185 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2784 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0154 Cco-Chr3:1520046 Cco05g2784 Cco-Chr5:35618996 4.30E-13 dispersed
Cco03g0158 Cco-Chr3:1531658 Cco05g2784 Cco-Chr5:35618996 3.60E-11 dispersed
Cco05g2784 Cco-Chr5:35618996 Cco06g1483 Cco-Chr6:25334478 1.80E-48 dispersed
Cco01g1444 Cco-Chr1:26208289 Cco05g2784 Cco-Chr5:35618996 1.50E-71 wgd
Cco05g2784 Cco-Chr5:35618996 Cco09g2090 Cco-Chr9:35300044 2.80E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g747 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02525 Cam05g2712 Cec05g2744 Cco05g2784 Clacu05g2715 Cmu05g2569 Cre05g2682 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001459 3 3 1 5 3 2 2 2 2 2 2 2 3 2 2 3 2 5 2 2 2 2 2 2 2 2 2 5 3 1 73