Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2797 ATGAGGTTGAACGATGGGGTTCTGAAATCGCTTCTCCGGCTCTTCCCTTATACTCTAGTCTCTAGGGCACAACGTACTCCAATTACTTCGTCGGAAAATCTGAAAGATAAGCCTGGAAGCTTTCAACTTCCTTGCGATCTTCTTTCGACTTCAATGGCGGATTCTTCCTCTTCCCCTGCGACTCTCGATTCAAATCCTCAAGCTGCCGAGCCCGAAAACCCCAATTCACAGGCCAACAAACCCGAATCTGCCGCTTCTTCTTTTCCTCCACCGCAATCGCTACCACCAACATCTCTTTCTGTCGGAATAAACCCTACCTTGCATCCACCCTTAGTGTCAACGCCGCAACCACCTCCTTCTCTATCGTATGCCCCCTCACCCTTATCCGGTGCGGTGGCCGTTCCTCCGACGGCACCGTCTTTCCGGCCTGTGCCTCTCTCTGCTCATCACTTCTCGCCCATGCCCGGCACTGGCATGCTGAACCCAAGCTATCCAAACCCTGGGGTTCAGCCTCCGGGGGTTAGCTCGGTTGCGGCGCCTGCTCCTGGTATGGCAAGTGGCGGCACGGGAGCAGTTCCAGTTCCAGTGCCACAACCGATGATGGCTTATCAAGTTCCACCGGGTCAGGTTCCGAATCCGGCGATGAGGCCGTACGCCACCATGCCAAATGGTTTCGCAGCTGTGCCAACTGCTACTCCTCAAGGGGCATTTCCTCTCCCTGGAATTCCACGTTTCCCTTCTCCATATCCTGCTATGATTAGGACGCCTTTTCCTCCACGGCCACCTGGTGCTATGGGCATGGTTCCTGCAATGCCACGACCTCCTATTCCTGGGATTCCTGGTGTGCGCCCAATCATACCTCCTGTGGTTCGGCCTGCTGTGCTCCCAAGTGTTACTCCAGCCGAACAACCACAAACTACTATTTATATTGGCCGAATTGCACAATCAGTGGATAATGATTTCATGCTGTCCCTTCTTCAGCTATGTGGACCAGTGAAGAGCTGGAAACGGGCCCAAAATCCATCGGATGGAACTCCTAGAACCTTTGGATTCTGCGAGTTTGAGTCTGCTGAAGGTGTTCTTCGGGCACTACGGTTACTGACAAAGTTAAACATTGATGGACAAGAACTAGTGCTAAAAGGTACTCAAGCAACAAGAGATTATCTGAAGCGTTATGTTGAAAAGAAAGCAGAGAATTCAAAGAAACTGAAAGAAACACAAGTTTCAGAGACTAAGGAAGAAGAAGCAGCCACAACGAATGTGGCTAGAAATGAAACTTCAAAGCCCTCTGCAGAGGATTCAAAGGAAGATAACGATTCAGGGGAAAAGGATCTTGACATTGCCCGTTCTGCAGTTTTAAGTGATGAAGATAGAGATGCAGACCGCGTGGCGTCGGAAAAACTTACAAATGCACTGGAGGAGAGGTTGAAGTCTAGACCTCTGCCACCACCTCCTCTTATGACAACTGCTGATGTCTCTGGTAATTCAAGTGCAGAGCCATCTGCTAAATTGAAAGATGGTGAAGCTGACGCTGATGTTTTGAAACCTGATGCAGCTGACGATAGAAATGATGATGACACAACTAGTGACCATAAACAAACTAGTGAGCAAGACAAGCCTGAAACAAGCTCACCGGACAGAAGTAGAAGGTATGACAGGAGAAGTCGAGAAAGAGATAGGGAGAGGGATCTGAAAAGGGATAAGGAGCGGGAAATTGAGAGATATGAAAGAGAGACAGAGCGGGAGCGAGCTAGGAAGGAGAGGGAACAAAGAAGAAAGTTTGAGGAGGCCGAGCGACAGTATGAAGAATGTCTCAAAGAGTGGGAATATCGAGAAAGAGAGAGAGAAAAGCAGAGGCAGTATGAGAAGGAGAGGGAGAAAGAGAAAGAGCGTAAAAGAAAGAAAGAGATATTGTATGATGAAGATGATGAGGATGACGATTCAAGAAGAAAATGGCGCAGAGGTGCTCTGGAGGAAAAGAGGAAGAAGAGGTCTCGAGAAAAGGAAGATGATTCGGTTGATAGACAGAAAGAGGAAGAAGAAATTGCTGAGGCCAAGAGGAGGGCTGAGGAGGAACAGCTGCAGAAACAGAAAGACCCGCTGAAACTTGTATCTGGTCAGATGTCGAATGTCAACGAGAAAACTATTCTTGCTGAAGAATCTGCTAATGAGATTAAAGTTATGGCTTCTGAACGTGAATCTGAGCTTGACGCTAGCTGTGATAACCATATAGGGGATGGGATCTTGCAAAATGGTAGTGGTGATGAACTAAGCACGATACCATCAGAGACTCGACATAGTGGAGGGTTGCCTGCAAAAAGGTTAGGATTTGGTTTAGTGGGATCTGGAAAACGGACTGCTGTACCTTCAGTTTTCCATGAGGAGGAGGATGATGAAGCACAGAAAGAGAAAAAGATGAGACCGCTGGTTCCAATTGATTACTCAGCTGAGGAACTACAGGCTGTTCAACCTGCCAGTACGGCTTTGCCGCCAAATTTAGCTGCAGCGGCTGAGTTTGCAAAACGTATATCTAATGTTAATTCCAAAGAAGAGAAGTCTGATGGTGAAAGGGAGCGAGGAAGGCGTTCCAGTGAAAAGTCAGGTCATAGAGACCGAAATGATGAGGATACCTATCGCAGCAAAGATGAGAACAAGACAATAGACAGAGATAGGGAGCGAGACCATGTTTTGGATAAAGTAAAAACACCAGATAACAAAAAACTTTTGGATGCGAAACAGTTGATTGATATGATTCCAAAGACAAAAGAGGAATTATTCTCATATGATATAAATTGGGCTATTTATGAAAAGCATGCACTACATGAGAGAATGAGACCGTGGATTTCAAAAAAGATAACAGAGTTTTTGGGGGAGGAGGAAACCACTCTTGTGGATTACATAGTTTCAAGTACTCAGGAACACGTAAAGGCATCTCAGATGCTGGAGCTGCTTCAGTCAATTTTGGATGAAGAAGCTGAAATGTTTGTTCTGAAGATGTGGAGAATGCTCATCTTCGAAATAAAAAAGGTAGAGACTGGTCTAGCTTTCAGAACAAAAGCATGA 3063 46.62 MRLNDGVLKSLLRLFPYTLVSRAQRTPITSSENLKDKPGSFQLPCDLLSTSMADSSSSPATLDSNPQAAEPENPNSQANKPESAASSFPPPQSLPPTSLSVGINPTLHPPLVSTPQPPPSLSYAPSPLSGAVAVPPTAPSFRPVPLSAHHFSPMPGTGMLNPSYPNPGVQPPGVSSVAAPAPGMASGGTGAVPVPVPQPMMAYQVPPGQVPNPAMRPYATMPNGFAAVPTATPQGAFPLPGIPRFPSPYPAMIRTPFPPRPPGAMGMVPAMPRPPIPGIPGVRPIIPPVVRPAVLPSVTPAEQPQTTIYIGRIAQSVDNDFMLSLLQLCGPVKSWKRAQNPSDGTPRTFGFCEFESAEGVLRALRLLTKLNIDGQELVLKGTQATRDYLKRYVEKKAENSKKLKETQVSETKEEEAATTNVARNETSKPSAEDSKEDNDSGEKDLDIARSAVLSDEDRDADRVASEKLTNALEERLKSRPLPPPPLMTTADVSGNSSAEPSAKLKDGEADADVLKPDAADDRNDDDTTSDHKQTSEQDKPETSSPDRSRRYDRRSRERDRERDLKRDKEREIERYERETERERARKEREQRRKFEEAERQYEECLKEWEYREREREKQRQYEKEREKEKERKRKKEILYDEDDEDDDSRRKWRRGALEEKRKKRSREKEDDSVDRQKEEEEIAEAKRRAEEEQLQKQKDPLKLVSGQMSNVNEKTILAEESANEIKVMASERESELDASCDNHIGDGILQNGSGDELSTIPSETRHSGGLPAKRLGFGLVGSGKRTAVPSVFHEEEDDEAQKEKKMRPLVPIDYSAEELQAVQPASTALPPNLAAAAEFAKRISNVNSKEEKSDGERERGRRSSEKSGHRDRNDEDTYRSKDENKTIDRDRERDHVLDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYDINWAIYEKHALHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKKVETGLAFRTKA 1020
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35717437 35724831 - CcPI632755_05g027970.1 Cco05g2797 180425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2797 1020 MobiDBLite consensus disorder prediction 399 419 - -
Cco05g2797 1020 MobiDBLite consensus disorder prediction 611 706 - -
Cco05g2797 1020 Gene3D - 299 419 IPR012677 -
Cco05g2797 1020 Coils Coil 611 638 - -
Cco05g2797 1020 MobiDBLite consensus disorder prediction 428 474 - -
Cco05g2797 1020 FunFam RNA Binding Motif protein homolog 899 1015 - -
Cco05g2797 1020 Coils Coil 394 414 - -
Cco05g2797 1020 MobiDBLite consensus disorder prediction 611 698 - -
Cco05g2797 1020 MobiDBLite consensus disorder prediction 789 808 - -
Cco05g2797 1020 MobiDBLite consensus disorder prediction 44 87 - -
Cco05g2797 1020 SMART rrm1_1 307 380 IPR000504 GO:0003723(InterPro)
Cco05g2797 1020 Coils Coil 668 695 - -
Cco05g2797 1020 MobiDBLite consensus disorder prediction 30 129 - -
Cco05g2797 1020 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 391 IPR000504 GO:0003723(InterPro)
Cco05g2797 1020 ProSiteProfiles PWI domain profile. 923 1020 IPR002483 -
Cco05g2797 1020 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 52 1020 IPR053294 -
Cco05g2797 1020 MobiDBLite consensus disorder prediction 845 899 - -
Cco05g2797 1020 CDD RRM_RBM25 306 389 IPR034268 -
Cco05g2797 1020 SUPERFAMILY RNA-binding domain, RBD 257 379 IPR035979 GO:0003676(InterPro)
Cco05g2797 1020 MobiDBLite consensus disorder prediction 399 599 - -
Cco05g2797 1020 Pfam PWI domain 943 1006 IPR002483 -
Cco05g2797 1020 Gene3D PWI domain 899 1015 - -
Cco05g2797 1020 MobiDBLite consensus disorder prediction 110 124 - -
Cco05g2797 1020 Pfam RNA recognition motif 308 377 IPR000504 GO:0003723(InterPro)
Cco05g2797 1020 Coils Coil 558 607 - -
Cco05g2797 1020 SUPERFAMILY PWI domain 941 1008 IPR036483 -
Cco05g2797 1020 SMART pwi_2 936 1009 IPR002483 -
Cco05g2797 1020 MobiDBLite consensus disorder prediction 728 808 - -
Cco05g2797 1020 MobiDBLite consensus disorder prediction 503 599 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2797 K12822 - - csv:101214372 1093.57
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g730 . . . . . . Bma14g01788 . . Cmo18g00807 . Cma18g00802 . Car18g00734 . Cpe09g00500 Cpe01g01526 Bhi07g01719 Tan04g1224 Cmetu10g0122 Lac13g0206 Hepe10g1646 . . Cla05g02535 Cam05g2726 Cec05g2756 Cco05g2797 Clacu05g2727 Cmu05g2580 Cre05g2694 Cone13ag1035 Cone19ag1026 . . Lsi04g00542 Csa05g02342 Chy10g00909 Cme10g00517 . Blo11g00910 Bda07g01597 . . . . . . . . Cma04g01727 . Car04g01759 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003580 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 5 1 47