Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2799 ATGAAAGATTTTGATTCTCTAACCGGGATTGAAATTTCAAAAGTCGACGGTCATGCATATAACTCAGTAGAAGTATGCCATGGATCTTCTAAGCCGCCATGGGATGCTTCATCTCGAGTTATGGATCTTCTCCAATCATACACAGATCAAAGCGACGAAGATGGAAGCCCTAAACAGCTTTCATCTTCACCAGAAGCCTCTCCGCCTCGACTTCTCCCCTCCAAAACCTCAGCGCCTAAGGTTGATGATACAATGTTAGCCCTCACGGTGGCGAACGCCAATCAGACCCTCTCGAAGCCGATAGACCCAACTCAACATCTCGTTGCCTTCAACCCCACTTACGACCAACTCTGGGCTCCCATTTACGGCCCATCTCATCCCTATGCCAAGGATGGCATTGCACAGGGCATGCGAAACCACAAGCTAGGGTTCGTGGAGAACGCGTCCATTGAACCATTTGTCTTCGATGAGCAGTACAACACTTTCCATAAATATGGATATGCTGCTGACCCATCAGCTTCTGCCGGAAACAATTACATTGGGGACATGGAGGCTTTGCAGAAGAATGATGCCATTTCCGTGTATAACATTCCACAGCACGAGCAAAAGAAGCGGAAGATTGAGAAAAAGAAAGAAATGAGTGAGAATGAGGATGTAGAAGAAGACTTGAACCCGGATGAAGTTGATAACCCAGCCACTGATGTGTGGTTGATGAAGAATAGGAAGAGTCCATGGTCTGGTAAGAAGGAAGGTCTGCAAACTGAGCTAACTGAGGAGCAGAAGAAATATGCAGAAGAGTATGCAAAGAAGAAAGGTGATGAGAAAGGTGGTGAGAAGGGAGAAGTTACAGCGGATAAGAGTACTTTTCATGGTAAAGAGGAGAGGGACTACCAAGGTAGATCTTGGATTGCACCCCCGAAGGATGCCAAGGCCACAAATGATCATTGTTATATACCAAAAAGATTGGTGCATACATGGAGCGGGCACACGAAGGGTGTATCTGCTATTAGATTCTTCCCTAAACATGGCCATTTGATTCTTTCAGCTGGTATGGATACCAAGGTGAAGATATGGGATGTGTTCAATTCTGGTAAATGTATGAGAACCTACATGGGTCACTCTCAGGCAGTTCGGGATATTTCATTTTGTAATGATGGATCTAAGTTTTTGACAGCCGGATATGATAAAAAGATTAAGTATTGGGATACAGAAACAGGGCAAGTGATATCAACCTTCTCCACCGGGAAAATTCCTTATGTAGTTAAGCTTAATCCTGATGATGATAAGCAGAATATTTTGCTGGCAGGGATGAGTGATAAGAAAATCGTTCAGTGGGATATGAACACAGGACAGATTACACAAGAGTATGATCAACATTTAGGAGCAGTGAATACCATTACATTTGTAGACAATAATAGGAGGTTTGTTACATCAAGTGATGACAAGTCTCTCCGTGTTTGGGAATTTGGAATTCCTGTTGTTATTAAGTATATTAGTGAGCCTCACATGCATTCCATGCCCTCCATTTCTGTACATCCCAATACGAATTGGCTTGCAGCACAGAGTTTAGACAATCAGATTCTTATTTATAGCACTAGGGAGAGATTTCAGCTAAACAAGAAAAAGAGGTTTGCTGGGCACATTGTGGCAGGATATGCGTGTCAGGTTAATTTTTCTCCAGATGGACGTTTTGTTATGTCGGGTGATGGTGAGGGTAAATGCTGGTTTTGGGATTGGAAAACCTGCAAGGTATTCAGAACTCTCAAGTGTCACGAAGGTGTTTGCATTGGGTGTGAGTGGCATCCATTGGAACAAAGTAAAGTAGCAACGTGCGGCTGGGATGGACTGATAAAGTATTGGGACTAG 1866 43.62 MKDFDSLTGIEISKVDGHAYNSVEVCHGSSKPPWDASSRVMDLLQSYTDQSDEDGSPKQLSSSPEASPPRLLPSKTSAPKVDDTMLALTVANANQTLSKPIDPTQHLVAFNPTYDQLWAPIYGPSHPYAKDGIAQGMRNHKLGFVENASIEPFVFDEQYNTFHKYGYAADPSASAGNNYIGDMEALQKNDAISVYNIPQHEQKKRKIEKKKEMSENEDVEEDLNPDEVDNPATDVWLMKNRKSPWSGKKEGLQTELTEEQKKYAEEYAKKKGDEKGGEKGEVTADKSTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISVHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKTCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35740231 35744880 - CcPI632755_05g027990.1 Cco05g2799 180427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2799 621 FunFam Pre-mRNA-processing factor 17, putative 306 621 - -
Cco05g2799 621 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 370 407 - -
Cco05g2799 621 PANTHER PRE-MRNA-PROCESSING FACTOR 17 41 621 IPR032847 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0003729(PANTHER)|GO:0071013(InterPro)|GO:0071013(PANTHER)
Cco05g2799 621 SUPERFAMILY WD40 repeat-like 317 621 IPR036322 GO:0005515(InterPro)
Cco05g2799 621 ProSiteProfiles Trp-Asp (WD) repeats profile. 588 621 IPR001680 GO:0005515(InterPro)
Cco05g2799 621 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 588 621 - -
Cco05g2799 621 ProSitePatterns Trp-Asp (WD) repeats signature. 346 360 IPR019775 -
Cco05g2799 621 Coils Coil 249 269 - -
Cco05g2799 621 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 456 488 - -
Cco05g2799 621 ProSiteProfiles Trp-Asp (WD) repeats profile. 370 411 IPR001680 GO:0005515(InterPro)
Cco05g2799 621 PRINTS G protein beta WD-40 repeat signature 346 360 IPR020472 -
Cco05g2799 621 PRINTS G protein beta WD-40 repeat signature 389 403 IPR020472 -
Cco05g2799 621 PRINTS G protein beta WD-40 repeat signature 475 489 IPR020472 -
Cco05g2799 621 MobiDBLite consensus disorder prediction 41 70 - -
Cco05g2799 621 MobiDBLite consensus disorder prediction 200 217 - -
Cco05g2799 621 MobiDBLite consensus disorder prediction 200 231 - -
Cco05g2799 621 Pfam WD domain, G-beta repeat 542 578 IPR001680 GO:0005515(InterPro)
Cco05g2799 621 Pfam WD domain, G-beta repeat 584 621 IPR001680 GO:0005515(InterPro)
Cco05g2799 621 Pfam WD domain, G-beta repeat 451 487 IPR001680 GO:0005515(InterPro)
Cco05g2799 621 Pfam WD domain, G-beta repeat 321 359 IPR001680 GO:0005515(InterPro)
Cco05g2799 621 Pfam WD domain, G-beta repeat 364 402 IPR001680 GO:0005515(InterPro)
Cco05g2799 621 CDD WD40 322 621 - -
Cco05g2799 621 Gene3D - 306 621 IPR015943 GO:0005515(InterPro)
Cco05g2799 621 ProSiteProfiles Trp-Asp (WD) repeats profile. 456 488 IPR001680 GO:0005515(InterPro)
Cco05g2799 621 MobiDBLite consensus disorder prediction 27 78 - -
Cco05g2799 621 SMART WD40_4 363 402 IPR001680 GO:0005515(InterPro)
Cco05g2799 621 SMART WD40_4 492 531 IPR001680 GO:0005515(InterPro)
Cco05g2799 621 SMART WD40_4 405 446 IPR001680 GO:0005515(InterPro)
Cco05g2799 621 SMART WD40_4 581 621 IPR001680 GO:0005515(InterPro)
Cco05g2799 621 SMART WD40_4 319 359 IPR001680 GO:0005515(InterPro)
Cco05g2799 621 SMART WD40_4 449 488 IPR001680 GO:0005515(InterPro)
Cco05g2799 621 SMART WD40_4 537 578 IPR001680 GO:0005515(InterPro)
Cco05g2799 621 MobiDBLite consensus disorder prediction 268 301 - -
Cco05g2799 621 MobiDBLite consensus disorder prediction 268 306 - -
Cco05g2799 621 Coils Coil 197 217 - -
Cco05g2799 621 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 326 360 - -
Cco05g2799 621 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 360 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2799 K12816 - - csv:101214854 1175.23
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g723 . . . . . Bpe10g00836 Bma14g01790 Bma15g00188 . Cmo18g00805 . . . Car18g00732 Sed06g1635 Cpe09g00502 Cpe01g01528 Bhi07g01722 Tan04g1228 Cmetu10g1166 . Hepe10g1644 . . Cla05g02538 Cam05g2728 Cec05g2758 Cco05g2799 Clacu05g2729 Cmu05g2582 Cre05g2696 . . . Cone12ag0639 Lsi04g00546 Csa05g02340 Chy10g00907 Cme10g00519 Blo06g00874 Blo11g00912 Bda07g01599 . . . . . . . . Cma04g01729 . Car04g01761 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004325 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 42