Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2800 ATGGAAGCGATTCTCGCATCCACACCTTCGCAACTCAAATCTCCTTTCCAGTCTCTCTCTTCCAAATTGTGGCCTTCTTTTTCCCTAACTCTCCGGGACAGTAAACGGAAGACAATCAGATATCCTCCGGCTTCTCGCATTCGTCTCAGAGTGTTCGCCAATTCGCAATCCGCGCCTGCTTCCGCCGTGGCGTCGGAAGTGTCGTCTGTGCCGTCGGAAATGAAAGCGTGGGTGTACGGTGAGTATGGAGGCGTCGATGTGTTGAAATTTGATAGCAGTGTATCGGTGCCTGAAGTGAAGGAGGATCAGGTTCTGATTAAGGTCGTTGCGGCGGCGCTTAACCCTGTCGATGCTAAACGGATGCAGGGGAAGTTCAAGGCTACGGATTCTCCTCTTCCGACAGTTCCAGGGTATGATGTAGCAGGTGTGGTGGTGAAGGTGGGAAGTCAGGTAAAGGAGCTAAAAGAAGGGGACGAAGTATATGGCAACATCAACGAGAAGGCCCTCGATGGCCCCAAACAGTTCGGTTCTCTTGCAGAGTACACAGCTGTAGAAGAGAAATTATTAGCCTTAAAACCCAAGAATATTGATTTTGTGCAGGCTGCTGGATTGCCTCTTGCCATTGAAACAGCCTACGAAGGTCTCCAAAAAACCAACTTTTCTGCTGGCAAATCAATCCTCGTTCTCAACGGTGCTGGTGGAGTTGGAAGCCTAGTCATTCAGATAGCAAAACATGTGTTTGGAGCTTCAAAAGTGGCAGCTACTTCAAGCACTGGAAAGTTAGAGTTTTTGAAAAGTTTGGGTGTCGATTTAGCCATTGACTATACCAAGGAGAACATCGAAGATTTGCCCGAAAAATTTGATGTAGTCTACGATGCAATTGGGCAGTGTGATAAGGCAGTGAAGGTAGTGAAAGAAGGTGGCAGCGTTGTGGCGCTGACAGGTGCGGTGACGCCGCCTGGTTTCAGATTTGTGGTCACTTCAGATGGAGCTGTTCTAAAGAAACTGAACCCCTATTTAGAAAGTGGGAAGGTGAAGCCGATTGTCGATCCGAAAGGACCATTTCCATTCTCTCAGGTTGTAGAGGCCTTCTCATATGTTGGAAGCAGCCGAGCCACTGGGAAAGTAGTCATACATCCAATTCCATGA 1149 48.3 MEAILASTPSQLKSPFQSLSSKLWPSFSLTLRDSKRKTIRYPPASRIRLRVFANSQSAPASAVASEVSSVPSEMKAWVYGEYGGVDVLKFDSSVSVPEVKEDQVLIKVVAAALNPVDAKRMQGKFKATDSPLPTVPGYDVAGVVVKVGSQVKELKEGDEVYGNINEKALDGPKQFGSLAEYTAVEEKLLALKPKNIDFVQAAGLPLAIETAYEGLQKTNFSAGKSILVLNGAGGVGSLVIQIAKHVFGASKVAATSSTGKLEFLKSLGVDLAIDYTKENIEDLPEKFDVVYDAIGQCDKAVKVVKEGGSVVALTGAVTPPGFRFVVTSDGAVLKKLNPYLESGKVKPIVDPKGPFPFSQVVEAFSYVGSSRATGKVVIHPIP 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35745596 35749233 + CcPI632755_05g028000.1 Cco05g2800 180428

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2800 382 CDD MDR_like_2 74 378 - -
Cco05g2800 382 SUPERFAMILY GroES-like 71 228 IPR011032 -
Cco05g2800 382 Pfam Alcohol dehydrogenase GroES-like domain 101 193 IPR013154 -
Cco05g2800 382 SMART PKS_ER_names_mod 83 378 IPR020843 GO:0016491(InterPro)
Cco05g2800 382 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 223 244 IPR002364 GO:0008270(InterPro)|GO:0016491(InterPro)
Cco05g2800 382 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 66 382 IPR044626 GO:0016628(InterPro)
Cco05g2800 382 Gene3D - 215 329 - -
Cco05g2800 382 Gene3D - 81 378 - -
Cco05g2800 382 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 196 318 IPR036291 -
Cco05g2800 382 Pfam Zinc-binding dehydrogenase 267 378 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2800 K18980 - - csv:101215501 635.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2051 Cco-Chr4:34512432 Cco05g2800 Cco-Chr5:35745596 6.90E-23 dispersed
Cco05g2800 Cco-Chr5:35745596 Cco09g0851 Cco-Chr9:8026802 1.10E-32 dispersed
Cco05g1086 Cco-Chr5:9658365 Cco05g2800 Cco-Chr5:35745596 1.10E-29 transposed
Cco05g2800 Cco-Chr5:35745596 Cco09g2103 Cco-Chr9:35395673 5.10E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g707 . . . . . . Bma14g01793 . . . . . . . Sed01g1019 . Cpe01g01529 Bhi07g01725 Tan04g1230 Cmetu09g1229 Lac13g0203 Hepe10g1643 . . Cla05g02539 Cam05g2729 Cec05g2760 Cco05g2800 Clacu05g2730 Cmu05g2583 Cre05g2697 Cone13ag1038 . . . Lsi04g00547 Csa05g02339 Chy10g00906 Cme10g00520 . Blo11g00915 Bda07g01601 . . . . . . Cmo04g02843 . Cma04g01730 . Car04g01763 . . . . . . . . . . . . . . . . . . . Chy09g00330 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011084 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30