Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2803 | ATGTCTTCTTCAAACGATACTTCTTCTCCTTCGTCGGATTCTATTTCAGATTCAAGTTTGCCGCCTGAAGCTTTGGATTCTTCTTCTCCTCCTCCTCCTACTCCCTCTTCTCCTCCACCCTCACCGCAGACAGATGGTTTTTCATCGATGATATTGAATCATGATGATGGTCTTCTGCCGTCGACTCTTTCATCCGCAACTAAAGCACCACCTATCGACGACCTAGTTTCACCATCTTCCTCACCTCCAGCTCCTCCAGATCCTGGAACTACACCGCCGGCCGCTACTGGCGACTCCGATTCAAATGCATCTGGCGACAATCCCTCGCCACCGCCTGAAGATTCTGCTTCGCCACCGCCGTCTCCTCAGCCGCGGCCTCATCCACCACCGCCTTCACCACCGCCTCCACAACAGCCGTCTATGGTTGGCGTCGTTAATCCTCCACCTACCCCTGTTCCGACGACAAAAGCATCTCCGACACCTCCAGGAAGCCCACCTTCTCCAGTATCTGAGGATGAACCCTTTGTCCCGGTGGATCAGAGCGCCGTTCAGACTCCTAATACAGACAAGGAGCCTCCACCATCTGAACCAACGGATGCCCTTCCTCCATCAGAAAATCCAGTCACGATTCCTTCACCAGCTGCAAACCCGGCGACGGGGAAACGAACTCCGAGTCCACCTCAAGGAATTGCTACTCCCACATCAGAGTCTAACATTCTTTCACCTCCCACAACCACATTCACATCCACATCCACATCCACTCGCACTCCGAACAACTCACCTCATTTCACCGACTCAACGCCAGTGAAATCACCATTAGGGCAGTCCAATGCACCATCATCTGGTTCAAGTAGTCAAGCCGATGTTGCAGTAGGCGCTGCAGTCGCTGGAGTTTTCGTAATCGTTTTGGTTGCTGTGGTTTTTATGTTCACAAGGAAGAAGAAAAGACGGAGAGAGATGTATACGGGCCCCTACATGCCTCCTAATAATTTTGGTGTGAAATCAGATGGAAATTACTATCCACATCAACATGGGGGTAACTCTGGTTCTACTGAAGGCTTCTATACTCAGGTCCCACATACTCCCATTGGAAATAGCTTTGGGAGTCAAAGAGGAACAGGATACAGTGGCAGTGGAACAGAGTCAGGTGTGATAAACAGTGCCAAGTTCTTCTTTAGCTATGAAGAATTGATGGAGATTACGTCTGGATTTTCGCGTCAAAACATTCTTGGGGAAGGTGGGTTTGGATGTGTTTACCAGGGTTGGCTTCCAGAAGGGAAGTCCGTGGCTGTGAAGCAACTCAAGGCAGGAAGTGGACAGGGGGAGAGGGAATTCAAGGCAGAAGTTGAGATTATCAGTCGTGTTCATCATCGACATCTGGTGTCTTTGGTGGGCTATTGCGTCTCTGAGCATCATAGATTGCTCATCTATGAGTTTGTTCCTAATAAGACTCTTGAGCATCATCTCCATAGCGGTAATGGAGTGCCTGTGTTGGATTGGTCCAAAAGACTCAAAATCGCTTTAGGAGCTGCAAAGGGTTTGGCATATCTTCATGAAGATTGTCATCCCAGAATTATCCACCGAGACATCAAGTCAGCCAACATTTTGCTGGATGACGCTTTTGAGGCGCAGGTCGCAGATTTTGGACTTGCGAAACTGACAAATGATACACACACCCACGTTTCCACTCGTGTCATGGGGACATTTGGATACATGGCACCCGAGTACGCATCAAGTGGGAAATTGACAGACAGATCAGATGTATTCTCGTTTGGGGTTGTGCTTCTTGAGCTTATTACCGGTCGTAAGCCTGTTGATCCAACTCAGCCCCTGGGGGATGAGAGTTTGGTTGAATGGGCTCGTCCACACCTCCTGCACGCCCTTGAAACCGGGGAGTTTGATGGATTGATAGATCCACGCCTTGGAAAACAGTATGTGGAAAGTGAAATGTTCAGAATGATCGAAGCAGCAGCTGCCTGTGTTCGTCATTCCGCTCCCAAAAGGCCTCGCATGGTTCAGGTGGTTAGAGCACTAGACATTGAAAGTGACATGTCTGACCTCTCCAATGGTGTTAAATATGGCCAAAGCACCATCTATGATTCTGGACAATACAATCAAGACATTTCTAAATTCAGAAGAATGGCACTCGGTTCAGACAGCTTCGAATACGATATTTACAGTAGCGAATACAATTCCAGAGAAATGACTGCAAGTCGTGAATCATGGAGATTCAACACTAACTCAAGCGGTGAATCAGAAACTCAAGCTTTTAAAGGACGAACTGGGGCACAACAAAGTCACCATAGTAGTCGACAATTCTAA | 2322 | 48.32 | MSSSNDTSSPSSDSISDSSLPPEALDSSSPPPPTPSSPPPSPQTDGFSSMILNHDDGLLPSTLSSATKAPPIDDLVSPSSSPPAPPDPGTTPPAATGDSDSNASGDNPSPPPEDSASPPPSPQPRPHPPPPSPPPPQQPSMVGVVNPPPTPVPTTKASPTPPGSPPSPVSEDEPFVPVDQSAVQTPNTDKEPPPSEPTDALPPSENPVTIPSPAANPATGKRTPSPPQGIATPTSESNILSPPTTTFTSTSTSTRTPNNSPHFTDSTPVKSPLGQSNAPSSGSSSQADVAVGAAVAGVFVIVLVAVVFMFTRKKKRRREMYTGPYMPPNNFGVKSDGNYYPHQHGGNSGSTEGFYTQVPHTPIGNSFGSQRGTGYSGSGTESGVINSAKFFFSYEELMEITSGFSRQNILGEGGFGCVYQGWLPEGKSVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVSLVGYCVSEHHRLLIYEFVPNKTLEHHLHSGNGVPVLDWSKRLKIALGAAKGLAYLHEDCHPRIIHRDIKSANILLDDAFEAQVADFGLAKLTNDTHTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGDESLVEWARPHLLHALETGEFDGLIDPRLGKQYVESEMFRMIEAAAACVRHSAPKRPRMVQVVRALDIESDMSDLSNGVKYGQSTIYDSGQYNQDISKFRRMALGSDSFEYDIYSSEYNSREMTASRESWRFNTNSSGESETQAFKGRTGAQQSHHSSRQF | 773 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 35769121 | 35772176 | + | CcPI632755_05g028030.1 | Cco05g2803 | 180431 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2803 | 773 | Pfam | Protein tyrosine and serine/threonine kinase | 407 | 676 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco05g2803 | 773 | MobiDBLite | consensus disorder prediction | 1 | 285 | - | - | |
Cco05g2803 | 773 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cco05g2803 | 773 | FunFam | proline-rich receptor-like protein kinase PERK8 | 480 | 693 | - | - | |
Cco05g2803 | 773 | SMART | serkin_6 | 404 | 678 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g2803 | 773 | SUPERFAMILY | Protein kinase-like (PK-like) | 385 | 678 | IPR011009 | - | |
Cco05g2803 | 773 | MobiDBLite | consensus disorder prediction | 744 | 773 | - | - | |
Cco05g2803 | 773 | Gene3D | Phosphorylase Kinase; domain 1 | 373 | 479 | - | - | |
Cco05g2803 | 773 | MobiDBLite | consensus disorder prediction | 111 | 172 | - | - | |
Cco05g2803 | 773 | MobiDBLite | consensus disorder prediction | 76 | 92 | - | - | |
Cco05g2803 | 773 | ProSiteProfiles | Protein kinase domain profile. | 404 | 684 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g2803 | 773 | CDD | STKc_IRAK | 410 | 679 | - | - | |
Cco05g2803 | 773 | ProSitePatterns | Protein kinases ATP-binding region signature. | 410 | 432 | IPR017441 | GO:0005524(InterPro) | |
Cco05g2803 | 773 | FunFam | Proline-rich receptor-like protein kinase PERK8 | 377 | 479 | - | - | |
Cco05g2803 | 773 | MobiDBLite | consensus disorder prediction | 190 | 210 | - | - | |
Cco05g2803 | 773 | MobiDBLite | consensus disorder prediction | 94 | 110 | - | - | |
Cco05g2803 | 773 | MobiDBLite | consensus disorder prediction | 211 | 285 | - | - | |
Cco05g2803 | 773 | Gene3D | Transferase(Phosphotransferase) domain 1 | 480 | 695 | - | - | |
Cco05g2803 | 773 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 255 | 714 | IPR047117 | - | |
Cco05g2803 | 773 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 525 | 537 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco05g2803 | 773 | MobiDBLite | consensus disorder prediction | 25 | 42 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2803 | Cco-Chr5:35769121 | Cco06g0955 | Cco-Chr6:12836502 | 5.70E-132 | dispersed | |
Cco11g1720 | Cco-Chr11:30038894 | Cco05g2803 | Cco-Chr5:35769121 | 4.40E-64 | dispersed | |
Cco05g2803 | Cco-Chr5:35769121 | Cco11g0541 | Cco-Chr11:5714802 | 9.70E-140 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86884 | PF07714 | PK_Tyr_Ser-Thr | 2.30E-44 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2803 | - | - | - | 0.0 |