Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2803 ATGTCTTCTTCAAACGATACTTCTTCTCCTTCGTCGGATTCTATTTCAGATTCAAGTTTGCCGCCTGAAGCTTTGGATTCTTCTTCTCCTCCTCCTCCTACTCCCTCTTCTCCTCCACCCTCACCGCAGACAGATGGTTTTTCATCGATGATATTGAATCATGATGATGGTCTTCTGCCGTCGACTCTTTCATCCGCAACTAAAGCACCACCTATCGACGACCTAGTTTCACCATCTTCCTCACCTCCAGCTCCTCCAGATCCTGGAACTACACCGCCGGCCGCTACTGGCGACTCCGATTCAAATGCATCTGGCGACAATCCCTCGCCACCGCCTGAAGATTCTGCTTCGCCACCGCCGTCTCCTCAGCCGCGGCCTCATCCACCACCGCCTTCACCACCGCCTCCACAACAGCCGTCTATGGTTGGCGTCGTTAATCCTCCACCTACCCCTGTTCCGACGACAAAAGCATCTCCGACACCTCCAGGAAGCCCACCTTCTCCAGTATCTGAGGATGAACCCTTTGTCCCGGTGGATCAGAGCGCCGTTCAGACTCCTAATACAGACAAGGAGCCTCCACCATCTGAACCAACGGATGCCCTTCCTCCATCAGAAAATCCAGTCACGATTCCTTCACCAGCTGCAAACCCGGCGACGGGGAAACGAACTCCGAGTCCACCTCAAGGAATTGCTACTCCCACATCAGAGTCTAACATTCTTTCACCTCCCACAACCACATTCACATCCACATCCACATCCACTCGCACTCCGAACAACTCACCTCATTTCACCGACTCAACGCCAGTGAAATCACCATTAGGGCAGTCCAATGCACCATCATCTGGTTCAAGTAGTCAAGCCGATGTTGCAGTAGGCGCTGCAGTCGCTGGAGTTTTCGTAATCGTTTTGGTTGCTGTGGTTTTTATGTTCACAAGGAAGAAGAAAAGACGGAGAGAGATGTATACGGGCCCCTACATGCCTCCTAATAATTTTGGTGTGAAATCAGATGGAAATTACTATCCACATCAACATGGGGGTAACTCTGGTTCTACTGAAGGCTTCTATACTCAGGTCCCACATACTCCCATTGGAAATAGCTTTGGGAGTCAAAGAGGAACAGGATACAGTGGCAGTGGAACAGAGTCAGGTGTGATAAACAGTGCCAAGTTCTTCTTTAGCTATGAAGAATTGATGGAGATTACGTCTGGATTTTCGCGTCAAAACATTCTTGGGGAAGGTGGGTTTGGATGTGTTTACCAGGGTTGGCTTCCAGAAGGGAAGTCCGTGGCTGTGAAGCAACTCAAGGCAGGAAGTGGACAGGGGGAGAGGGAATTCAAGGCAGAAGTTGAGATTATCAGTCGTGTTCATCATCGACATCTGGTGTCTTTGGTGGGCTATTGCGTCTCTGAGCATCATAGATTGCTCATCTATGAGTTTGTTCCTAATAAGACTCTTGAGCATCATCTCCATAGCGGTAATGGAGTGCCTGTGTTGGATTGGTCCAAAAGACTCAAAATCGCTTTAGGAGCTGCAAAGGGTTTGGCATATCTTCATGAAGATTGTCATCCCAGAATTATCCACCGAGACATCAAGTCAGCCAACATTTTGCTGGATGACGCTTTTGAGGCGCAGGTCGCAGATTTTGGACTTGCGAAACTGACAAATGATACACACACCCACGTTTCCACTCGTGTCATGGGGACATTTGGATACATGGCACCCGAGTACGCATCAAGTGGGAAATTGACAGACAGATCAGATGTATTCTCGTTTGGGGTTGTGCTTCTTGAGCTTATTACCGGTCGTAAGCCTGTTGATCCAACTCAGCCCCTGGGGGATGAGAGTTTGGTTGAATGGGCTCGTCCACACCTCCTGCACGCCCTTGAAACCGGGGAGTTTGATGGATTGATAGATCCACGCCTTGGAAAACAGTATGTGGAAAGTGAAATGTTCAGAATGATCGAAGCAGCAGCTGCCTGTGTTCGTCATTCCGCTCCCAAAAGGCCTCGCATGGTTCAGGTGGTTAGAGCACTAGACATTGAAAGTGACATGTCTGACCTCTCCAATGGTGTTAAATATGGCCAAAGCACCATCTATGATTCTGGACAATACAATCAAGACATTTCTAAATTCAGAAGAATGGCACTCGGTTCAGACAGCTTCGAATACGATATTTACAGTAGCGAATACAATTCCAGAGAAATGACTGCAAGTCGTGAATCATGGAGATTCAACACTAACTCAAGCGGTGAATCAGAAACTCAAGCTTTTAAAGGACGAACTGGGGCACAACAAAGTCACCATAGTAGTCGACAATTCTAA 2322 48.32 MSSSNDTSSPSSDSISDSSLPPEALDSSSPPPPTPSSPPPSPQTDGFSSMILNHDDGLLPSTLSSATKAPPIDDLVSPSSSPPAPPDPGTTPPAATGDSDSNASGDNPSPPPEDSASPPPSPQPRPHPPPPSPPPPQQPSMVGVVNPPPTPVPTTKASPTPPGSPPSPVSEDEPFVPVDQSAVQTPNTDKEPPPSEPTDALPPSENPVTIPSPAANPATGKRTPSPPQGIATPTSESNILSPPTTTFTSTSTSTRTPNNSPHFTDSTPVKSPLGQSNAPSSGSSSQADVAVGAAVAGVFVIVLVAVVFMFTRKKKRRREMYTGPYMPPNNFGVKSDGNYYPHQHGGNSGSTEGFYTQVPHTPIGNSFGSQRGTGYSGSGTESGVINSAKFFFSYEELMEITSGFSRQNILGEGGFGCVYQGWLPEGKSVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVSLVGYCVSEHHRLLIYEFVPNKTLEHHLHSGNGVPVLDWSKRLKIALGAAKGLAYLHEDCHPRIIHRDIKSANILLDDAFEAQVADFGLAKLTNDTHTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGDESLVEWARPHLLHALETGEFDGLIDPRLGKQYVESEMFRMIEAAAACVRHSAPKRPRMVQVVRALDIESDMSDLSNGVKYGQSTIYDSGQYNQDISKFRRMALGSDSFEYDIYSSEYNSREMTASRESWRFNTNSSGESETQAFKGRTGAQQSHHSSRQF 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35769121 35772176 + CcPI632755_05g028030.1 Cco05g2803 180431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2803 773 Pfam Protein tyrosine and serine/threonine kinase 407 676 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g2803 773 MobiDBLite consensus disorder prediction 1 285 - -
Cco05g2803 773 MobiDBLite consensus disorder prediction 1 24 - -
Cco05g2803 773 FunFam proline-rich receptor-like protein kinase PERK8 480 693 - -
Cco05g2803 773 SMART serkin_6 404 678 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2803 773 SUPERFAMILY Protein kinase-like (PK-like) 385 678 IPR011009 -
Cco05g2803 773 MobiDBLite consensus disorder prediction 744 773 - -
Cco05g2803 773 Gene3D Phosphorylase Kinase; domain 1 373 479 - -
Cco05g2803 773 MobiDBLite consensus disorder prediction 111 172 - -
Cco05g2803 773 MobiDBLite consensus disorder prediction 76 92 - -
Cco05g2803 773 ProSiteProfiles Protein kinase domain profile. 404 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2803 773 CDD STKc_IRAK 410 679 - -
Cco05g2803 773 ProSitePatterns Protein kinases ATP-binding region signature. 410 432 IPR017441 GO:0005524(InterPro)
Cco05g2803 773 FunFam Proline-rich receptor-like protein kinase PERK8 377 479 - -
Cco05g2803 773 MobiDBLite consensus disorder prediction 190 210 - -
Cco05g2803 773 MobiDBLite consensus disorder prediction 94 110 - -
Cco05g2803 773 MobiDBLite consensus disorder prediction 211 285 - -
Cco05g2803 773 Gene3D Transferase(Phosphotransferase) domain 1 480 695 - -
Cco05g2803 773 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 255 714 IPR047117 -
Cco05g2803 773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 525 537 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g2803 773 MobiDBLite consensus disorder prediction 25 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2803 Cco-Chr5:35769121 Cco06g0955 Cco-Chr6:12836502 5.70E-132 dispersed
Cco11g1720 Cco-Chr11:30038894 Cco05g2803 Cco-Chr5:35769121 4.40E-64 dispersed
Cco05g2803 Cco-Chr5:35769121 Cco11g0541 Cco-Chr11:5714802 9.70E-140 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86884 PF07714 PK_Tyr_Ser-Thr 2.30E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2803 - - - 0.0