Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2804 ATGAGAAGCTTTCAGGGAACTCTGGAGTGTCTTAGAGCTTTAGTTGAGACTAAACTTTGGGATTATTGCATTGTTTGGAAATCAAGGGATGATTCTTCTTCCAGGTTCATTCATTGGGTTGGTTGCTGCTGTAGCGGTGGAGTTTCCGACGCCGGCGGGAAAGAGGAAGCCGGAGAGACGATCCCAGCTACTCTTTGTAAGGACACTCGATTTCGACATTTTAGAAGGACAAATGCTTGCCAAGCACTTGCTCAGTTCCCTTCTTCAATATCATTAAACTCTGGGGTCCATGGGGATGTTTCGATTTCGAATCAACCCATGTGGCTTACAAGTACTGAAGTTTCTTCTACTTCAACTTTTTCACATGAGTTGACTGGAACTCGAGTCCTAATTCCTGTTTCTGGTGGAATTGTGGAGCTTTTTGCTACAAAACACATGCCAAGAGAGGCAGAGGTTATAGACTACGTAATGGCTCACTGTAATGTCTCTCTGGAGCATGAATTTGAAACAGAAAGTGAACTGAATGCTGGCCTCAATGAGGAAAGACTCCATTCATCTACCAAATTCTATCCAATAAACTGCCCTGATTCTCAGCCCTTGCTTGATTTCAAATCCAAATTAGAAATTCTTCCTTCAGTGTCCCAGTCCAGTTCCTTTCCTAGCTGTGGTGAAGGATCATCCAGTGGCTCCAAGCCTTCCAATGAGCATCAATACTTTGATTCCTATTCGAGTTTGGTTTCTCGTGGACTCTTGAACCAACCAATTCACAGGTCTTTTGAATCGAAAGGGCCGGTGCACCAAGAAGATTTGCTGGAACAACAAAGGGATGTGGCTTCAGAATATTCAAAGAGCTTGCAGAAAGATGAAGCCAAAACTGGAGGGAAACAAGGAAAGGAAGTTTTCAAATCCAAGAATCTCTTCACAGAGAGGAGAAGAAGAGACAAGATTCGGGATCGTCTCTATGCTCTACGTGCTTTAGTCCCTAATATATCCAAGATGGATAGAGCATCAATCATTGTGGATGCTATCAACTACATAAGAGAGTTGGAAGAGAATGTGAAAAGCCTCCAGAATGAACTCATTCAATTGGAGCATGAGGACTATCAAAAGAACAAACACTTGAAGATTTCTCCATTAGAGAAGAAAAATGATAACACTAATTGTTGGCCTCTGGTTCAGGATGATCAGCCAATGTTTATCCTTGGTGAGGAGAGGCCTATGGAGGTGGAAGTGGAAGTGATGCAAATTAATGAAAGAGATTTCTTAATCAAGCTATTATGCAAGCGAAAACAAGGCGGAGTAGTGAGCTCAATAGTGGCAATGGATTCGTTGGGCTTGCAGGTTGTTGATGTCAATATTACAACCTTTGGGGGTATGGTCCTGAACATTTTCCATGTTGAGGCGAATGAAAATGACATTCAGCCAAAGAGATTAAGAGACTCACTGATCAAGCTAACAAGCAGAGAAATCAGATAA 1476 42.28 MRSFQGTLECLRALVETKLWDYCIVWKSRDDSSSRFIHWVGCCCSGGVSDAGGKEEAGETIPATLCKDTRFRHFRRTNACQALAQFPSSISLNSGVHGDVSISNQPMWLTSTEVSSTSTFSHELTGTRVLIPVSGGIVELFATKHMPREAEVIDYVMAHCNVSLEHEFETESELNAGLNEERLHSSTKFYPINCPDSQPLLDFKSKLEILPSVSQSSSFPSCGEGSSSGSKPSNEHQYFDSYSSLVSRGLLNQPIHRSFESKGPVHQEDLLEQQRDVASEYSKSLQKDEAKTGGKQGKEVFKSKNLFTERRRRDKIRDRLYALRALVPNISKMDRASIIVDAINYIRELEENVKSLQNELIQLEHEDYQKNKHLKISPLEKKNDNTNCWPLVQDDQPMFILGEERPMEVEVEVMQINERDFLIKLLCKRKQGGVVSSIVAMDSLGLQVVDVNITTFGGMVLNIFHVEANENDIQPKRLRDSLIKLTSREIR 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35772790 35774954 - CcPI632755_05g028040.1 Cco05g2804 180432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2804 491 MobiDBLite consensus disorder prediction 276 297 - -
Cco05g2804 491 Coils Coil 339 366 - -
Cco05g2804 491 MobiDBLite consensus disorder prediction 214 235 - -
Cco05g2804 491 Gene3D - 295 367 IPR036638 GO:0046983(InterPro)
Cco05g2804 491 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 300 349 IPR011598 GO:0046983(InterPro)
Cco05g2804 491 CDD ACT_UUR-ACR-like 422 484 - -
Cco05g2804 491 SMART finulus 306 355 IPR011598 GO:0046983(InterPro)
Cco05g2804 491 Pfam Helix-loop-helix DNA-binding domain 308 350 IPR011598 GO:0046983(InterPro)
Cco05g2804 491 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 299 366 IPR036638 GO:0046983(InterPro)
Cco05g2804 491 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 261 484 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cco05g2804 491 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 157 IPR025610 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2804 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0443 Cco-Chr2:3993208 Cco05g2804 Cco-Chr5:35772790 4.10E-59 dispersed
Cco02g0649 Cco-Chr2:6477512 Cco05g2804 Cco-Chr5:35772790 5.20E-06 dispersed
Cco02g2312 Cco-Chr2:35600866 Cco05g2804 Cco-Chr5:35772790 7.70E-16 dispersed
Cco05g2804 Cco-Chr5:35772790 Cco10g1341 Cco-Chr10:26392937 5.60E-16 dispersed
Cco05g2804 Cco-Chr5:35772790 Cco06g1562 Cco-Chr6:26208841 8.60E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g698 . . . . . . . . . . . . . . Sed04g0627 . Cpe01g01533 Bhi07g01732 Tan04g1237 Cmetu10g1279 . . . . Cla05g02543 Cam05g2733 Cec05g2764 Cco05g2804 Clacu05g2734 Cmu05g2587 Cre05g2701 . . . . Lsi04g00551 . Chy10g00903 . . . Bda07g01603 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007013 1 2 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 6 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59408 PF14215 bHLH-MYC_N 7.10E-19 CL0161 Cco TF