Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2808 ATGACGTGTTCAATGATTCTCTCGGTGGTGATTGTTGAAGGGGTTCTAGCTGGTAAGACAACTATCCTCTACAAGCTCAAGCTTGGCGAGATCGTCACAACAATCCCTACCATCGGGTTTAATGTTGAAACTGTAGAGTACAAAAACATCAGCTTCACGGTCTGGGATGTTGGGGGTCAAGACAAGATTCGTCCCTTGTGGAGGCACTACTTCCAGAACACACAGGGTCTCATATTTGTTGTTGATAGCAATGACAGAGATCGAGTTGTTGAGGCCAGGGATGAATTGCATAGGATGTTGAATGAGGATGAGCTGCGAGATGCAGTTCTTCTTGTGTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAGATCACCGACAAGCTTGGTCTCCACTCTCTCCGCCAGCGTCACTGGTACATCCAGAGCACATGCGCCACCTCTGGAGAGGGGCTTTATGAGGGGTTGGATTGGCTCTCCAACAACATTGCTAACAAGGCATAA 513 47.17 MTCSMILSVVIVEGVLAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35793778 35796575 - CcPI632755_05g028080.1 Cco05g2808 180436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2808 170 CDD Arf1_5_like 17 165 IPR045872 GO:0003924(InterPro)
Cco05g2808 170 ProSiteProfiles small GTPase Arf family profile. 1 166 - -
Cco05g2808 170 Gene3D - 6 170 IPR027417 -
Cco05g2808 170 NCBIfam small GTP-binding protein domain 8 146 IPR005225 GO:0005525(InterPro)
Cco05g2808 170 SMART sar_sub_1 1 166 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco05g2808 170 PANTHER ADP RIBOSYLATION FACTOR-RELATED 11 167 IPR024156 GO:0005525(InterPro)|GO:0005525(PANTHER)|GO:0005737(PANTHER)|GO:0006886(PANTHER)|GO:0016192(PANTHER)
Cco05g2808 170 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 168 IPR027417 -
Cco05g2808 170 Pfam ADP-ribosylation factor family 16 166 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco05g2808 170 PRINTS GTP-binding SAR1 protein signature 108 129 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco05g2808 170 PRINTS GTP-binding SAR1 protein signature 63 88 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco05g2808 170 PRINTS GTP-binding SAR1 protein signature 8 31 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco05g2808 170 PRINTS GTP-binding SAR1 protein signature 36 60 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco05g2808 170 SMART arf_sub_2 1 170 - -
Cco05g2808 170 FunFam ADP-ribosylation factor 1 3 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2808 K07937 - - ath:AT3G62290 316.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2808 Cco-Chr5:35793778 Cco09g0471 Cco-Chr9:4145200 3.90E-86 dispersed
Cco01g0472 Cco-Chr1:4642407 Cco05g2808 Cco-Chr5:35793778 1.30E-15 transposed
Cco05g2808 Cco-Chr5:35793778 Cco08g1974 Cco-Chr8:30535817 5.10E-86 wgd
Cco05g2808 Cco-Chr5:35793778 Cco09g2118 Cco-Chr9:35575259 1.50E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g680 . Blo16g01160 . Bda11g01269 Bpe13g01466 . . . . Cmo18g00798 . Cma18g00794 . . Sed06g1643 . . Bhi07g01737 Tan04g1244 Cmetu03g0260 . . . . Cla05g02547 . . Cco05g2808 . . Cre05g2705 . . . . Lsi04g00556 Csa05g02332 Chy10g00900 . . . . Bda11g01269 . . . Bma06g00618 . Cmo04g02828 . Cma04g01736 . . . . . . . . . . . . . . . . . . . . . Chy09g00345 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000063 9 18 10 8 7 8 7 10 8 7 8 7 18 10 10 19 7 15 6 8 11 10 12 9 4 7 7 18 10 9 297