Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2813 ATGAACCATCTCTTTGAACTGCCTGAAAAGATTTGTTATGTGCAATGTGGAATATGTACCACCATTTTGTTGGTCAGTGTGCCGTGTGGCAGCTTATCGATGGCAGTGACTGTGACGTGTGGCCACTGCTCGAGCCTCCTTTCTGTTAACATGATGAAAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTTTATCTCACAATGTGCCCAAAGAAGCTTGTAGAGAAATGAATTCAGGGAAGTTCTTTGACAGTTTCAAAAGACCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCCGCCACACCTCCTTTTGTAAACAAACCTCCTGAGAAGAGACAACGTGCCCCATCAGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTCACAATCCGGAAATGACTCACAAGGAGGCCTTTAGAACAGCTGCAAAGAATTGGGCAAATTTCCCTCCAATCCAAGAAAAAGAAGACACAGAGAACTGTAATCAGATTGAGGTTCACAAGGATGGAAAGTGTTTCCCAAGGCATTCATTTTTGACATAA 570 42.28 MNHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKEACREMNSGKFFDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPIQEKEDTENCNQIEVHKDGKCFPRHSFLT 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35829198 35830589 - CcPI632755_05g028130.1 Cco05g2813 180441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2813 189 PANTHER PROTEIN YABBY 6-RELATED 8 171 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER)
Cco05g2813 189 SUPERFAMILY HMG-box 104 160 IPR036910 -
Cco05g2813 189 Pfam YABBY protein 8 162 IPR006780 GO:0007275(InterPro)
Cco05g2813 189 CDD HMG-box_SF 119 165 - -
Cco05g2813 189 Gene3D High mobility group box domain 110 175 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2813 Cco-Chr5:35829198 Cco06g1303 Cco-Chr6:23255525 6.20E-32 dispersed
Cco05g2813 Cco-Chr5:35829198 Cco08g1964 Cco-Chr8:30442812 5.40E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59409 PF04690 YABBY 8.10E-58 CL0114 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2813 K25796 - csv:101211641 334.724