Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2818 ATGGAAGAAATGTACGGTTTACAATCCACGGCGGAGTATTCAGATAAGGCCTTGATGTCGCCGGAGAATCTGATTCTTCCGCCGGATTATCAGAGCCTTCTTGTGAGTTCTGGAGAGTTTCGCGATCGGATTCCGGTGTTTGGATCCAACGAACTGCTTTCAGCGGCGGCATCGGCGATTTCGGAAGCGGAAGCAGCATCGATCACGCCGGAAATTCGACGTGAAGAAGATATGGTGAACGTGATCAAAGCGAAAATTTCTTCTCATCCTACTTATCCTCGTTTGCTCGACGCCTATATTGACTGCCAAAAGGTGGGAGCGCCTCCGGAGATTGCACATTTGTTAGAGGGAATCCGTCAAGAAAGCGACCTGTGTAACCGTCACGCTGTCACCACGTGCTTGGGCGTCGATCCTGAGCTCGATGAATTCATGGAAACATACTGCGATATGTTGGTGAAGTACAAATTAGATCTCAAAAGGCCTTTCGACGAAGCAACTACGTTCTTGAATAAGATCGAACTGCAACTTAGTAACCTCTGCAATGGCACCTTCTCCAGAAGCCTTTCCGATGACGGTGCTGTCTCATCGGATGAAGAATTGAGCGGTGGAGAGATGGAAGTTGTGGAGGCGGAGGCTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTCTACGTAGATTTGGGAGTCATATTAGTACCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAAACACTCTTTGAATGGTGGAACGTTCACTATAAATGGCCATATCCTACGGAAGCCGATAAGGTTGCATTGGCAGAGAGAACGGGACTAGATCAAAAGCAAATTAACAATTGGTTCATAAATCAGAGGAAACGCCACTGGAAGCCATCAGAGAATATACAGTTTGAAGGAATGGATGGGCTTTCTTCTGATGCAATAGAGGCTGTTGGCAAGTTGGGGCTTGGGGTAGCTTTAGCCGATACCTGTATTCGGGTTTTAAAATAG 1026 46.39 MEEMYGLQSTAEYSDKALMSPENLILPPDYQSLLVSSGEFRDRIPVFGSNELLSAAASAISEAEAASITPEIRREEDMVNVIKAKISSHPTYPRLLDAYIDCQKVGAPPEIAHLLEGIRQESDLCNRHAVTTCLGVDPELDEFMETYCDMLVKYKLDLKRPFDEATTFLNKIELQLSNLCNGTFSRSLSDDGAVSSDEELSGGEMEVVEAEAQTKGENRDLKDKLLRRFGSHISTLKLEFSKKKKKGKLPKEARQTLFEWWNVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENIQFEGMDGLSSDAIEAVGKLGLGVALADTCIRVLK 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35868572 35875907 + CcPI632755_05g028180.1 Cco05g2818 180446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2818 341 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco05g2818 341 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677(InterPro)
Cco05g2818 341 Pfam ELK domain 220 241 IPR005539 GO:0003677(InterPro)
Cco05g2818 341 Gene3D - 239 311 - -
Cco05g2818 341 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 133 313 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco05g2818 341 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco05g2818 341 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco05g2818 341 SMART HOX_1 242 307 IPR001356 GO:0003677(InterPro)
Cco05g2818 341 SMART KNOX2_2 130 181 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco05g2818 341 CDD homeodomain 252 304 IPR001356 GO:0003677(InterPro)
Cco05g2818 341 SMART KNOX1_2 80 124 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco05g2818 341 Pfam KNOX1 domain 82 123 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco05g2818 341 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677(InterPro)
Cco05g2818 341 SMART ELK_2 220 241 IPR005539 GO:0003677(InterPro)
Cco05g2818 341 SUPERFAMILY Homeodomain-like 241 313 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2007 Cco-Chr5:29168120 Cco05g2818 Cco-Chr5:35868572 1.10E-71 dispersed
Cco05g2818 Cco-Chr5:35868572 Cco08g1861 Cco-Chr8:29647500 1.70E-64 dispersed
Cco02g1619 Cco-Chr2:28814351 Cco05g2818 Cco-Chr5:35868572 7.40E-42 transposed
Cco08g1958 Cco-Chr8:30396695 Cco05g2818 Cco-Chr5:35868572 2.30E-55 transposed
Cco05g2818 Cco-Chr5:35868572 Cco06g1911 Cco-Chr6:29344686 1.20E-57 wgd
Cco05g2818 Cco-Chr5:35868572 Cco08g1957 Cco-Chr8:30384952 2.70E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59410 PF03791 KNOX2 5.60E-24 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2818 - - - 0.0