Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2819 ATGAAACCCTACAACTTCTCCTTTGCGATTCCCTTCCTTCTAATACTCTTGCTATTTCGTCTTCTAATCCAATCGGCGGCTGATCCCAGAGCTACTGAGGCGGCTCTCATATGTTCCAACAACACTGCTTCGCCGCCGGAGAGATCGACCTTTGTGTCGAATTTCTTGGACTCTATGGATGCGGTTACTCCTCTTATTGCTTCACAGCGATTTGCAGCCGTTGTGAATGGGACTGGAAATACGTCTGTTTATGCTTTTGGAGAGTGTATGAACGATCTTACTCAATCGGATTGTGATCTCTGTTTTGCCCAGATGAAAACTCAGATCCTGCGGTGTCTCCCCTTTCAGCTTGCTACTCGAGGGGGCAGACTTTTCTATGACGGGTGTTATGTTAGGTATGATTATTATAACTTCTTTAACGAATCCTTGAGTGCTGTGGATAGGACTGTATGTGGGAAATCGGATTACAGTGGGAATCGGACTATTTTTAGTGACAATGCTATGAAATTGGCGAGGAATTTGAGTGTAGTAGCGCCCAAGAACGATGGGTTTGCTGTGGGATTGGTGAATTTGAGAAATGTGTCCGTTTATGGATTGGGTCAGTGTTGGAAATTTGTGAAAGGGACTTCTTGTTCCAAGTGTTTGGTTGATGCAGCTAAGGAAATCGGTTCTTGTCCTCCAAAAACTGAAGGAAGGGTGTTGAATGCTGGCTGTTACTTCAGATATTCAACTGAACGATTTTATTTCAACAGCACGGCAACCGCTACCGGAGGAAATGGAAGCCGTCGTCTGGCGGTAATTTTGGCTTCAGTATCTGCTGCTGTGGCTGCTGCATTGATTATTTCAACGGTTGTTTTCTGTGCCAGAAGGAGAGTAGTCAGGAAACGCAGAGAGAAAAAGCAACTCGGTCCTCTTGTGGCTATTGTTAACAAGTCCAAGCTTAATTTTTCATATGAGACTCTTGAGAGGGCCACAAATTACTTTGACCAATCCAATAAACTAGGACAAGGAGGTTCTGGTTCAGTTTATAAAGGAACCCTATCAGATGGCAGAGTTGTAGCAATCAAGAGGCTTTTCTTCAATACAAGACAATGGGTGGACCATTTCTTTAATGAAGTAAATCTTATTAGCGGCATCCGACACAAAAATCTTGTAGGGCTGCTGGGATGCAGCATTACAGGCCCTGAAAGCCTCCTTGTTTATGAATACGTGCCAAATCAGAGCTTGCACGATTACATGTTTGGTAACAAGAATGTCCAGCCACTGAGTTGGGAATCCAGGTTTAAGATTGTCTTAGGCACAGCTGAAGGCTTGGCTTATCTTCACGAGGAGTCAAATGTGAAAATCATTCATCGCGACATAAAACTAAGCAATATTCTGCTGGACAATGATTTCACTCCGAAGATTGCTGATTTTGGACTTGCTAGACTGCTTCCCGAAGATAAGACACACATTAGTACCGCAATTGCTGGCACACTAGGTTACATGGCTCCTGAATATGTAGTGCGTGGCAAGTTGTCTGAAAAGGCCGATGTTTACAGTTTTGGAGTTTTTGCCATTGAAGTCATCACTGGAAGGAGGAATAATCACTTCTATCAAGATTCAACGTCCATCTTACAAAAGGTATGGAATTTGTATGGAGAGGGAAGGCTATATGCAGCTGTTGATCCTATATTATCGGGTGATTATCCACGAGACGAAGCATCTCGGTTGCTTCAAATAGGTCTAGTTTGCGTGCAAGCCTTTGCTGATCTAAGGCCATCCATGTCGATGGTTGTGAAAATGCTTACAGCAAATTACGAGATTCCCCAGCCAAAACAGCCTCCATATCTTCATCCTTCAAGTGGAAACATAAAATCCCAAAATTCTTCAGACTCATCCAATCCCATTTTGTATTATAACTCGCGATCTTCACAAAATAGCATGACCCAAAGCACAATCGACCCCAGATGA 1953 43.37 MKPYNFSFAIPFLLILLLFRLLIQSAADPRATEAALICSNNTASPPERSTFVSNFLDSMDAVTPLIASQRFAAVVNGTGNTSVYAFGECMNDLTQSDCDLCFAQMKTQILRCLPFQLATRGGRLFYDGCYVRYDYYNFFNESLSAVDRTVCGKSDYSGNRTIFSDNAMKLARNLSVVAPKNDGFAVGLVNLRNVSVYGLGQCWKFVKGTSCSKCLVDAAKEIGSCPPKTEGRVLNAGCYFRYSTERFYFNSTATATGGNGSRRLAVILASVSAAVAAALIISTVVFCARRRVVRKRREKKQLGPLVAIVNKSKLNFSYETLERATNYFDQSNKLGQGGSGSVYKGTLSDGRVVAIKRLFFNTRQWVDHFFNEVNLISGIRHKNLVGLLGCSITGPESLLVYEYVPNQSLHDYMFGNKNVQPLSWESRFKIVLGTAEGLAYLHEESNVKIIHRDIKLSNILLDNDFTPKIADFGLARLLPEDKTHISTAIAGTLGYMAPEYVVRGKLSEKADVYSFGVFAIEVITGRRNNHFYQDSTSILQKVWNLYGEGRLYAAVDPILSGDYPRDEASRLLQIGLVCVQAFADLRPSMSMVVKMLTANYEIPQPKQPPYLHPSSGNIKSQNSSDSSNPILYYNSRSSQNSMTQSTIDPR 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35875949 35879567 - CcPI632755_05g028190.1 Cco05g2819 180447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2819 650 ProSiteProfiles Gnk2-homologous domain profile. 33 138 IPR002902 -
Cco05g2819 650 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 168 633 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cco05g2819 650 FunFam Cysteine-rich receptor-like protein kinase 2 294 403 - -
Cco05g2819 650 FunFam Cysteine-rich receptor-like protein kinase 2 404 604 - -
Cco05g2819 650 SMART serkin_6 328 611 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2819 650 ProSiteProfiles Protein kinase domain profile. 328 611 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2819 650 Gene3D - 144 247 IPR038408 -
Cco05g2819 650 Gene3D - 32 138 IPR038408 -
Cco05g2819 650 CDD STKc_IRAK 334 597 - -
Cco05g2819 650 Pfam Salt stress response/antifungal 151 244 IPR002902 -
Cco05g2819 650 Pfam Salt stress response/antifungal 38 135 IPR002902 -
Cco05g2819 650 Gene3D Transferase(Phosphotransferase) domain 1 404 607 - -
Cco05g2819 650 MobiDBLite consensus disorder prediction 606 650 - -
Cco05g2819 650 Gene3D Phosphorylase Kinase; domain 1 288 403 - -
Cco05g2819 650 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524(InterPro)
Cco05g2819 650 FunFam Cysteine-rich receptor-like protein kinase 3 147 247 - -
Cco05g2819 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g2819 650 MobiDBLite consensus disorder prediction 611 650 - -
Cco05g2819 650 FunFam Cysteine-rich receptor-like protein kinase 2 31 138 - -
Cco05g2819 650 SUPERFAMILY Protein kinase-like (PK-like) 314 634 IPR011009 -
Cco05g2819 650 ProSiteProfiles Gnk2-homologous domain profile. 144 247 IPR002902 -
Cco05g2819 650 Pfam Protein kinase domain 329 530 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2819 Cco-Chr5:35875949 Cco06g1585 Cco-Chr6:26425038 1.00E-78 dispersed
Cco03g1117 Cco-Chr3:20889034 Cco05g2819 Cco-Chr5:35875949 4.00E-47 transposed
Cco06g0053 Cco-Chr6:496050 Cco05g2819 Cco-Chr5:35875949 2.90E-12 transposed
Cco10g1386 Cco-Chr10:26924363 Cco05g2819 Cco-Chr5:35875949 1.10E-152 transposed
Cco05g2819 Cco-Chr5:35875949 Cco08g1955 Cco-Chr8:30375461 1.60E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86885 PF00069 Pkinase 3.90E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2819 - - - 0.0