Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2822 ATGGAGGTCGACGGCGGAGCAACGGCGGCGGCTCAGCCGAGGAAATTCTCTCTCCCGGTGGACTCCGAACACAAATCCACCAAATTCAACATATTCTCCGTCGCAGCGCCGCACATGCGAACGTTTCATCTCTCATGGATTTCCTTCTGCGCTTGTTTCATTTCCAGTTTCGCGGCGGCTCCTCTGCTTCCGGTGATCCGCGACAACCTCGATTTAACCGACACCGACATTGGAAACGCCGGAATCGCCTCCGTCTCGGGCGCCGTCTTCGCCCGAATCATGATGGGTTCCGCCTGCGACTTGGTCGGACCACGTCTCGCCTCCGCTTCACTCATTCTTATAACCTCACCGGCGGTTTATTTAACCTCCATAGCTTCATCCCCTGTTTCGTTTCTCCTTGTCCGATTCTTCACCGGCTTCTCCCTCGCTACATTCGTCTCAACCCAATTCTGGATGAGTTCCATGTTCTCCTCCAACGTCGTCGGCACCGCCAACGGTGTCGCCGGCGGCTGGGGGAACCTAGGCGGCGGCGCAACACAGTTAATCATGCCGTATGTTTTCGCCATCATCGAACACATCGGCGCAACGAAATTCACCGCGTGGAGAATCGCTTTCTTCATCCCAGCGTTATTCCAAACGCTTTCCGCCTTCGCCGTTCTCCTCCTGGGCGAGGACACTCCAGACGGGAATTTCCGGCCGCTGCAGAAAACAGGGGAGAAGGCGAAAGACGAATTATCGAAAGTTGTGTTGAATGGGGTGAAGAATTACAGGGGATGGATTCTGGCATTGACTTATGGGTATAGTTTCGGAGTGGAATTGACGATTGATAATGTAATAGCGAATTACTTCTACGATAGGTTTAATTTGAATCTGCACACGGCGGGGATAGTGGCGGCGAGTTTTGGGCTGGCGAATCTGTTTTCGAGGCCTTACGGCGGAGTATTGTCGGATGTGGTGGGGAAAAGATTTGGAATGAGAGGGAGACTGTGGGCTTTGTGGTCGGTGCAAACAATTGGGGGAATTTTGTGTGTGATTCTTGGGTTGGTTAATTCTTTGAGTGCTTCGATTGCCATTATGATCGTTTTTTCAGTGTTTGTTCAAGCTGCTTGTGGACTTACTTTTGGTGTTGTTCCTTTCGTCTCTCGAAGGTCATTAGGAGTAATATCGGGGATGACAGGTGGGGGCGGGAATGTGGGGTCGGTGCTGACTCAGCTGATATTCTTCAGAGGCAACAGATACACAAAAGAGAGAGGAATAAGTCTAATGGGAGTGATGATAATAGCTTGCACTCTCCCAATTGCATTGATTTATTTTCCTCAATGGGGCAGTATGTTCTTTGGGCCTTCCTCCAAAATTGCTTCTGAGGAAGACTATTACTTGTCGGAATGGACTTCTGAGGAGAAGGCCAAAGGCTTCCATATGGCTAGCCTTAAGTTTGCTGAGAATAGTCGAACTGAAAGAGGCAAAAGCCTCAAGGGAACTGCTGATGCTGATCTTGCCTCCTCTAATGTTTAA 1515 50.36 MEVDGGATAAAQPRKFSLPVDSEHKSTKFNIFSVAAPHMRTFHLSWISFCACFISSFAAAPLLPVIRDNLDLTDTDIGNAGIASVSGAVFARIMMGSACDLVGPRLASASLILITSPAVYLTSIASSPVSFLLVRFFTGFSLATFVSTQFWMSSMFSSNVVGTANGVAGGWGNLGGGATQLIMPYVFAIIEHIGATKFTAWRIAFFIPALFQTLSAFAVLLLGEDTPDGNFRPLQKTGEKAKDELSKVVLNGVKNYRGWILALTYGYSFGVELTIDNVIANYFYDRFNLNLHTAGIVAASFGLANLFSRPYGGVLSDVVGKRFGMRGRLWALWSVQTIGGILCVILGLVNSLSASIAIMIVFSVFVQAACGLTFGVVPFVSRRSLGVISGMTGGGGNVGSVLTQLIFFRGNRYTKERGISLMGVMIIACTLPIALIYFPQWGSMFFGPSSKIASEEDYYLSEWTSEEKAKGFHMASLKFAENSRTERGKSLKGTADADLASSNV 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35901688 35904147 - CcPI632755_05g028220.1 Cco05g2822 180450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2822 504 Gene3D MFS general substrate transporter like domains 240 443 IPR036259 -
Cco05g2822 504 ProSiteProfiles Major facilitator superfamily (MFS) profile. 41 442 IPR020846 GO:0022857(InterPro)
Cco05g2822 504 CDD MFS_NRT2_like 42 435 IPR044772 GO:0015112(InterPro)
Cco05g2822 504 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 11 489 IPR044772 GO:0005886(PANTHER)|GO:0015112(PANTHER)|GO:0015112(InterPro)|GO:0015706(PANTHER)|GO:0071249(PANTHER)
Cco05g2822 504 FunFam High affinity nitrate transporter 2.5 34 230 - -
Cco05g2822 504 Pfam Major Facilitator Superfamily 46 402 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Cco05g2822 504 FunFam Nitrate transporter 2.1 242 443 - -
Cco05g2822 504 SUPERFAMILY MFS general substrate transporter 36 438 IPR036259 -
Cco05g2822 504 Gene3D MFS general substrate transporter like domains 35 232 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0278 Cco-Chr3:2988405 Cco05g2822 Cco-Chr5:35901688 2.00E-173 dispersed
Cco03g0279 Cco-Chr3:3001965 Cco05g2822 Cco-Chr5:35901688 2.00E-173 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2822 K02575 - csv:101212365 854.358