Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2825 ATGGCTGAAAAGCAATTGGTTTCTTTCTCACTGGTGTTTCTCGCCGCCGTCTTGTTCGCCGGCCAAGCTCAGGGATCCGACATCTGCCAAGAAGCCCAATACGTGCCGCTCTGCCGATCCGTGGTGAAAGGTGCTTCCGATCCGACGGTCGCCATCAAAATAGCCATTGAAAATCTCTTGTTTGAAACAAAACGCGCTAAAGCAGGGAGCGTGAAGCTGGCCAATGCGCAGGCCATTAACGCTTGCAATCAGAACTACGACTCCGCCATTGACAGCCTTGAGAAGGGCTTGCAGTATTTGAAGAGCAAGGACAAGCAGAGCCTTCAGGTCATGCTTTCCGGGGCCTTATCTTTCTACGTTTCCTGCAGCGATGCGGTCGTGGAAGTCAGCAGCTTCGGCGTCGTCAAAATGGCTTCAACCATTATGAATACCGATACGACGCTGCAACATCTGGCTTCAAATTGCTTGCACGTCGCCTCTTTGTTGAACTTGATCTTGAGAGGAAGTGCAATAGCGAATATGAGTAATTCCATTAGTCAGAATATACTCCACCAGAGATTGCTTCGTCCTTCAGTTTTTGATAACCAAAGTAAATTCAATCCTTCCGGGACCCATAAGAATATTCTTTTTCAAGCTGCATTAGCCAATCAAGTTCCAGCACAACATTGGAAATCTCCTATATCAACAAAGTTCTTAGGGAACGGTCTAAATGTTAAAAAACCAAGGATGGCCACTGGAACAGGTCGCCGCAGCTTTCCTGTTAATCCACATGCTGTATTAGCCACGGATCCTGCTTCCAAGCTTGCTGGGAAGTTCAAACTGGATGAGAATATTGAACTGCAGGTTGATGTTAGTGTCCCTACTTCAGGTTCCATTAGATGTGTAAATATCCTGGTCACAAACATCGGTGGCTCTCTTCTTCTTCATTGGGGTGCAATACGTGATAGAAAAGATAAATGGGCGCTTCCCTCACGTTGCCCAGATGGAACTCAAGTATATAAGAACAGAGCTCTTAGAACTCCTTTTCTGAAATCTGGTTCCAATTCTACCCTAACAATCGAGGTTGATGACCCAGCAATAGAAGCAATTGAGTTTCTCTTACTTGATGAAGCTCATAATAAATGGTATAAGAACAATGACAAAAACTTTCATGTTGCGTTACCTGTGAAAGAAAAGTTTAATTCAGATGTTTCAGTTCCTGAAGAACTTGTACAAATTCAAGCATATTTGAGATGGGAAAGAAAGGGCAAACAGATGTATACTCCACAACAGGAGCAGGAAGAGTATGAAGCAGCTCGAGATGAGTTATTGCAGGAATTAACCAGGGGTGCTACCCTACAAGATCTCAGAGCTAGACTAACCAAAGAAAATGATGGCAGTGAAACAATGGAGCTATCCACTGCCAAAGGCAAGACAATTCCTGATGAACTTGTTCAAATTCAAGCTTTTATACGTTGGGAGAAAGCAGGGAAACCCAATTACTCTGCTGAGCAGCAACTTAGGGAATTTGAAGAAGCAAAGAAAGAGTTGCTATCAGAACTAGCTAAAGGTGCTACTGTTGATGAGATTCGGAAGAAGATTACCAAAGGAGAAATTAGAACTAAAGTAGCAAAGCAGTTGCAGGATAAAAGGTACTTTAGAGTAGAGAAAATTCAGCGCAAGAAGAGGGACTTGGTGCAACTTGTAAATAAATACACTTATCAACCTATAGAGGAAACATACACAGCCAAACCAAAAGCCTTGACAGAAGTCGAGCAATTTGCAAAGATAAAGGAGGAACAGGATGGTGGTGATGTTATAAACAAAATCATCTACAAGCTTGGTGATAGGGATCTTTTGGTTCTTGTAACAAAAAATGCTAGCAAGACGAAGGTTTATCTGGCTACAGATTTACCGGAGCCTGTTACTCTTCACTGGGGTTTGTCTAGATCAAATGCTGGCGAGTGGCTGACACCTCCTCCTGATGTACTTCCACCGGGTTCAGTTTCGTTGAGCAAGGCAGCTGAAACACAATTCAAATTCAACGCTGATGGTTCCTCTCTAAAGGTCCAATATCTAGAAATCTTAATCGAAGAGGATGGTTTTGTGGGAATGCCATTCGTTCTTCAGTCTTCTGGAAATTGGATCAAGAACAAAGGCTCAGATTTTTATGTTGCCTTTGCCATCCAACCAAAGAAAGTGCGAAAGGATACTGAGGGTGGCAAAGGTACTGCAAAGTCATTGTTGGATAAAATTGCAGAACTGGAGAGTGAGGCAGAAAAGTCCTTCATGCATCGATTTAACATTGCAGCTGACTTGACGGATGAAGCTAAAGATGCTGGTGAATTGGGACTTGCAGGGATCTTGGTGTGGATGAGATTTATGGCAACAAGGCAGCTTATATGGAATAAAAATTATAATGTGAAACCACGTGAAATCAGTAAAGCACAAGACAGACTCACAGATTTGTTAGAGAGTATTTATGCAAGCTATCCACAATATAGGGAGCTTTTACGGATGATTATGTCTACTGTTGGACGGGGTGGGGAAGGAGATGTTGGGCAGAGAATTCGGGATGAAATTTTAGTCATTCAGAGAAACAATGATTGCAAAGGAGGAATGATGGAAGAATGGCATCAGAAATTGCACAATAATACTAGCCCTGATGATGTAGTCATCTGTCAGGCATTAATCGATTACATTAATAGTGACTTTGATATTGGCATTTACTGGAAAACTTTGAATGAGAATGGAATCACAAAAGAAAGGCTTCTAAGCTATGATCGTGCAATTCATTCTGAGCCAAATTTTAGGAGAGATCAAAAGGATGGTCTTTTGCGTGATCTAGGAAACTACATGAGAACGCTGAAGGCAGTTCATTCAGGTGCAGATCTAGAATCTGCCGTTCAAAACTGCATGGGCTATAGATCTGAGGGTCAAGGCTTCATGGTTGGGGTGCAGATAAATCCTATTTCTGGTTTACCGTCTGGATTACCGGATTTGCTGCAATTTGTTTTAGAACATATTGAAATCAAGAATGTTGAACCACTTCTTGAGGGCTTGCTTGAAGCTCGGCAAGAGCTACGTCCTTTGCTTCTTAAACCTCGAGACCGTCTGAGGGATCTCTTATTTTTGGATATTGCCCTTGATTCTGCTGTTAGGACTGCTGTTGAGAGGGGATATGAGGAACTAAATACTGCAGGACCGGAGAAAATTATGTACTACATCACTCTCGTTCTGGAAAATCTTGCACTGTCATCAGATGATAATGAGGATCTCATCTACAGCTTGAAGGGATGGGATCTTGCATTAAACCTCACAAGAAGTAAAAATGATCATTGGGCATTATATGCAAAGTCTGTGCTTGATAGAACCCGCCTTGCACTTGCAAACAAGGCAGAAGCATATCATCGCATCCTGCAGCCATCTGCTGAGTACTTGGGGTCTCTGCTTGGAGTAGACCAATGGGCTGTTGATATATTTACCGAAGAAATCATCCGTTCTGGATCAGCTTCCTCTTTATCCTCACTTCTAAATAGACTTGATCCTGTTTTGCGGACAACTGCTAACCTTGGGAGCTGGCAGATTATTAGCCCAGTTGAAGCTGTTGGTTATATAGTTGTCGTGGATGAGTTGCTTGCTGTTCAGAACAAATCATATGAGAAGCCAACAATTCTAGTTGCAAACCGAGTAAAAGGTGAGGAAGAAATTCCAGATGGTACTGTTGCAGTGTTGACGCCCGATATGCCAGATGTTCTTTCTCATGTTTCTGTTCGAGCAAGAAATGGAAAGGTTTGCTTCGCAACATGCTTTGATTCAAGTATTCTATCAGACCTTCAAGGTAAAGAAGGGAAGTTGGTGCGTCTAAAGCCTACATCTGCTGATATTGTATATAGCGAGGTAAAGGAGGATGAGGTACCAGATGCAAGTTCCATCCATGAGCATGATGGTGTTCCATCAACGGTAACTCTTGTCAGAAAGCACTTTAGTGGTAAATATGCCATTGTATCTGAAGAGTTCACAAGTGAACTGGTTGGAGCAAAATCACGTAATATTTCTTATCTGAAAGGAAAAGTCCCATCTTGGGTTGGGATCCCTACCTCTGTTGCCCTTCCATTTGGAGTTTTTGAGGAAGTTTTGTCTGATGAATCAAATAAGGCAGTGGAGGAAAAGGTTCATGATTTGAAGATTAAGTTAGGAGCAGGGGATTTCAATGCTCTGAAGGAGATTCGCAAGACAGTTCTACAGCTGGCAGCACCCCCTCAATTGGTGCTAGAGTTAAAATCTAAGATGAAAAATTCGGGAATGCCCTGGCCTGGTGATGAAGGTGAAGAGCGATGGGAGCAAGCATGGATGGCTATAAAGAAGGTGTGGGCTTCAAAGTGGAATGAGAGAGCTTACTTCAGCACCAGAAAGGTGAAATTAGACCACGACTATCTCTGCATGGCTGTCCTTGTACAGGAAATCATTAATGCTGACTATGCATTTGTTATCCATACAACCAATCCATCTTCTGGAGACTCGTCTGAGATTTATACAGAGGTTGTGAAAGGACTTGGAGAAACTTTAGTAGGAGCATATCCAGGACGTGCTTTGAGCTTTATATGCAAGAAAAATGATTTAGATACTCCCAAGGTGTTGGGTTACCCAAGCAAGCCCATTGGTCTGTTCATCAGACGATCCATTATTTTCCGATCTGATTCCAATGGTGAGGACCTGGAAGGATATGCTGGGGCAGGTCTCTACGACAGTGTACCGATGGACGAAGAAGAGAAGGTTGTTCTAGATTACACAACGGATCCACTCATTGTAGACGACAACTTTAGAAAGTCGATTCTCTCTAGCATTGCTCATGCAGGAAATGCAATTGAGGAACTTTATGGATCTCCTCAAGACATTGAAGGTGTGATTAGAGATGGGAAAGTATATGTCGTCCAAACAAGACCCCAAATGATGAGTTCTACCCTTATCAGCAAAGATCAGGGTCCTGAAGGTCAACATCATCGTGATCGGGGCATCGATACATTCTCGTGGAGAATTTTCAAGAACAATGAGAGAGTAGCACCAAACAAGCATAATTATTTTCTATATTTTCGAACCGTTGCAATCTTCGTCTTTTGCTTCATTGCCATCGGCATAATAATGATTTTATCATTACTGTTATTCAAGTAG 5151 42.5 MAEKQLVSFSLVFLAAVLFAGQAQGSDICQEAQYVPLCRSVVKGASDPTVAIKIAIENLLFETKRAKAGSVKLANAQAINACNQNYDSAIDSLEKGLQYLKSKDKQSLQVMLSGALSFYVSCSDAVVEVSSFGVVKMASTIMNTDTTLQHLASNCLHVASLLNLILRGSAIANMSNSISQNILHQRLLRPSVFDNQSKFNPSGTHKNILFQAALANQVPAQHWKSPISTKFLGNGLNVKKPRMATGTGRRSFPVNPHAVLATDPASKLAGKFKLDENIELQVDVSVPTSGSIRCVNILVTNIGGSLLLHWGAIRDRKDKWALPSRCPDGTQVYKNRALRTPFLKSGSNSTLTIEVDDPAIEAIEFLLLDEAHNKWYKNNDKNFHVALPVKEKFNSDVSVPEELVQIQAYLRWERKGKQMYTPQQEQEEYEAARDELLQELTRGATLQDLRARLTKENDGSETMELSTAKGKTIPDELVQIQAFIRWEKAGKPNYSAEQQLREFEEAKKELLSELAKGATVDEIRKKITKGEIRTKVAKQLQDKRYFRVEKIQRKKRDLVQLVNKYTYQPIEETYTAKPKALTEVEQFAKIKEEQDGGDVINKIIYKLGDRDLLVLVTKNASKTKVYLATDLPEPVTLHWGLSRSNAGEWLTPPPDVLPPGSVSLSKAAETQFKFNADGSSLKVQYLEILIEEDGFVGMPFVLQSSGNWIKNKGSDFYVAFAIQPKKVRKDTEGGKGTAKSLLDKIAELESEAEKSFMHRFNIAADLTDEAKDAGELGLAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLESIYASYPQYRELLRMIMSTVGRGGEGDVGQRIRDEILVIQRNNDCKGGMMEEWHQKLHNNTSPDDVVICQALIDYINSDFDIGIYWKTLNENGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSGADLESAVQNCMGYRSEGQGFMVGVQINPISGLPSGLPDLLQFVLEHIEIKNVEPLLEGLLEARQELRPLLLKPRDRLRDLLFLDIALDSAVRTAVERGYEELNTAGPEKIMYYITLVLENLALSSDDNEDLIYSLKGWDLALNLTRSKNDHWALYAKSVLDRTRLALANKAEAYHRILQPSAEYLGSLLGVDQWAVDIFTEEIIRSGSASSLSSLLNRLDPVLRTTANLGSWQIISPVEAVGYIVVVDELLAVQNKSYEKPTILVANRVKGEEEIPDGTVAVLTPDMPDVLSHVSVRARNGKVCFATCFDSSILSDLQGKEGKLVRLKPTSADIVYSEVKEDEVPDASSIHEHDGVPSTVTLVRKHFSGKYAIVSEEFTSELVGAKSRNISYLKGKVPSWVGIPTSVALPFGVFEEVLSDESNKAVEEKVHDLKIKLGAGDFNALKEIRKTVLQLAAPPQLVLELKSKMKNSGMPWPGDEGEERWEQAWMAIKKVWASKWNERAYFSTRKVKLDHDYLCMAVLVQEIINADYAFVIHTTNPSSGDSSEIYTEVVKGLGETLVGAYPGRALSFICKKNDLDTPKVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEEEKVVLDYTTDPLIVDDNFRKSILSSIAHAGNAIEELYGSPQDIEGVIRDGKVYVVQTRPQMMSSTLISKDQGPEGQHHRDRGIDTFSWRIFKNNERVAPNKHNYFLYFRTVAIFVFCFIAIGIIMILSLLLFK 1716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35921723 35937370 + CcPI632755_05g028250.1 Cco05g2825 180453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2825 1716 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 163 IPR035513 -
Cco05g2825 1716 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 162 IPR035513 -
Cco05g2825 1716 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 1335 1648 - -
Cco05g2825 1716 Gene3D - 1484 1643 - -
Cco05g2825 1716 CDD PMEI-like_2 22 162 - -
Cco05g2825 1716 Pfam Plant invertase/pectin methylesterase inhibitor 27 157 IPR006501 GO:0004857(InterPro)
Cco05g2825 1716 Coils Coil 493 516 - -
Cco05g2825 1716 FunFam alpha-glucan water dikinase, chloroplastic isoform X2 1437 1483 - -
Cco05g2825 1716 Pfam Alpha-glucan water dikinase, phosphohistidine-like domain 1186 1298 IPR054481 -
Cco05g2825 1716 SMART PMEI_2 20 158 IPR006501 GO:0004857(InterPro)
Cco05g2825 1716 PANTHER ALPHA-GLUCAN WATER DIKINASE 1, CHLOROPLASTIC-RELATED 247 459 - -
Cco05g2825 1716 Gene3D - 1329 1483 IPR013815 GO:0005524(InterPro)
Cco05g2825 1716 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 1442 1648 IPR002192 GO:0005524(InterPro)|GO:0016301(InterPro)|GO:0016310(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2825 K08244 - - csv:101218978 2684.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2823 Cco-Chr5:35916718 Cco05g2825 Cco-Chr5:35921723 4.00E-40 dispersed
Cco05g2824 Cco-Chr5:35918832 Cco05g2825 Cco-Chr5:35921723 8.70E-43 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g644 . . . . . . Bma14g01813 . . Cmo18g00786 . Cma18g00782 . Car18g00712 Sed02g0999 Cpe09g00517 . Bhi07g01760 Tan04g1274 Cmetu10g1422 Lac13g0174 Hepe10g1614 . . Cla05g02568 Cam05g2753 Cec05g2786 Cco05g2825 Clacu05g2754 Cmu05g2605 Cre05g2720 Cone13ag1057 Cone19ag1047 . . Lsi04g00572 Csa05g02313 Chy10g00882 Cme10g00548 . Blo11g01059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011444 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 31