Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2827 ATGGATTCTTCTTCTCGTCTTGTTCCTCTTCTTGTTTTTTCCCTTCTTGTCGTTTCATCCTTTTGTCCTGTCCACTCCCTCGACAAAAAAATCCATCCCAATAACCAAACGACGACGTTTCGCCCCCAGGATCATTCCAACAGATTGAAGCTTATTAGAGCTCATCTCAAGAAAATCAACAAGCCCCCCATCAAGACCATTCAGAGTCCAGATGGTGATTTTATAGATTGTGTTATATCTCATCAACAGCCAGCTTTTGATCATCCATTACTGAAAGGACAGAAGCCATTGGATCTGCCGGAGAGACCATATGAACGGAGTTCTTCCGGCGGGGAAGGATCGGAAACGTTTCAATTATGGAGCATTTCCGGCGAATTTTGCCCGGAGGGAACTGTTCCGATCAGAAGAACGACAGAAAATGACATGCTGAGAGCAAACTCTGTTCAAAGATTTGGAAGGAAAGCAAGACGACGCATTAGAAGAGACTCTTCCAGCAATGGCCACGAGCATGCCGTGGGATTTGTAAGTGGAGAAGAGTACTACGGAGCAAAAGCAAGCATAAATGTATGGGCGCCGCGGGTGACGAATCAGTATGAGTTCAGTCTGTCACAGATGTGGGTCATTTCTGGTTCTTTTGGAGATGATCTAAACACCATTGAAGCTGGATGGCAGGTTAGCCCAGAGTTGTATGGTGACAATTACCCAAGATTTTTCACTTATTGGACTTCAGACGCATATCAAGCAACTGGGTGCTACAATTTACTCTGTTCCGGCTTCGTTCAAACCAACAACAGAATCGCCATTGGAGCTGCAATTTCTCCAACATCTTCCTACAATGGCGGCCAATTCGACATCAGTCTACTTGTTTGGAAGGATCCGAAACATGGAAATTGGTGGTTGGAATTCGGGTCGGGCGTGTTAGTCGGGTACTGGCCGGCATTTTTATTCACTCACCTTCGAAGCCACGCAACGATGATCCAATTCGGCGGCGAAGTGGTGAATTCGAGGGCGTCGGGGTTTCACACGGCGACGCAAATGGGGAGCGGCCATTTCGCTGGCGAAGGATTTGGAAAAGCTTCGTATTTTCGTAACCTGCAAGTTGTGGATTGGGACAACAGCTTAATTCCACTCTCGAATCTGAAGGTTTTGGCTGATCATCCAAATTGCTATAATATTCAAGGTGGGATTAATAGAGTTTGGGGAAATTACTTTTATTATGGTGGCCCTGGAAGAAATGTGAGGTGTCCCTAA 1251 45.96 MDSSSRLVPLLVFSLLVVSSFCPVHSLDKKIHPNNQTTTFRPQDHSNRLKLIRAHLKKINKPPIKTIQSPDGDFIDCVISHQQPAFDHPLLKGQKPLDLPERPYERSSSGGEGSETFQLWSISGEFCPEGTVPIRRTTENDMLRANSVQRFGRKARRRIRRDSSSNGHEHAVGFVSGEEYYGAKASINVWAPRVTNQYEFSLSQMWVISGSFGDDLNTIEAGWQVSPELYGDNYPRFFTYWTSDAYQATGCYNLLCSGFVQTNNRIAIGAAISPTSSYNGGQFDISLLVWKDPKHGNWWLEFGSGVLVGYWPAFLFTHLRSHATMIQFGGEVVNSRASGFHTATQMGSGHFAGEGFGKASYFRNLQVVDWDNSLIPLSNLKVLADHPNCYNIQGGINRVWGNYFYYGGPGRNVRCP 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35949786 35954320 + CcPI632755_05g028270.1 Cco05g2827 180455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2827 416 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 35 410 IPR053168 -
Cco05g2827 416 MobiDBLite consensus disorder prediction 88 114 - -
Cco05g2827 416 Pfam Neprosin activation peptide 66 172 IPR025521 -
Cco05g2827 416 Gene3D - 189 307 - -
Cco05g2827 416 FunFam Putative carboxyl-terminal proteinase 189 308 - -
Cco05g2827 416 Pfam Neprosin 198 409 IPR004314 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2827 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2827 Cco-Chr5:35949786 Cco08g1866 Cco-Chr8:29712176 1.90E-65 dispersed
Cco03g1165 Cco-Chr3:22311914 Cco05g2827 Cco-Chr5:35949786 6.70E-138 transposed
Cco09g0346 Cco-Chr9:3079615 Cco05g2827 Cco-Chr5:35949786 4.70E-133 transposed
Cco01g1478 Cco-Chr1:26551221 Cco05g2827 Cco-Chr5:35949786 1.10E-182 wgd
Cco05g2827 Cco-Chr5:35949786 Cco06g1918 Cco-Chr6:29429499 5.10E-180 wgd
Cco05g2827 Cco-Chr5:35949786 Cco08g1953 Cco-Chr8:30363845 1.50E-195 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g642 Blo01g00390 Blo16g01168 Bda01g02212 Bda11g01281 Bpe13g01479 Bpe10g00850 . Bma15g00174 . . . Cma18g00779 . . Sed06g1661 . . Bhi07g01763 Tan04g1276 Cmetu10g1375 . . . . Cla05g02570 Cam05g2755 Cec05g2788 Cco05g2827 Clacu05g2756 Cmu05g2607 Cre05g2722 . . . . Lsi04g00574 Csa05g02311 Chy10g00880 Cme10g00550 Blo06g00890 . . Bda11g01281 . . Bma01g00040 Bma06g00606 . . . Cma04g01749 Cma05g00037 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002792 3 2 3 2 2 2 0 2 2 2 2 2 1 1 2 2 2 2 0 2 2 2 2 2 1 2 2 4 2 1 56